| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 52495 = | 30 (1.280) | 62 (2.660) +T |
5/278 | 2.2 | 70.6% | intergenic (+105/‑568) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 52988 | 22 (0.940) | intergenic (+598/‑75) | USA300HOU_RS00215/USA300HOU_RS00220 | hypothetical protein/hypothetical protein | |||||
TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAT > USA300TCH1516_ALE/52356‑52634 | tgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgcg < 1:250140/141‑1 (MQ=255) aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGa > 1:400209/1‑141 (MQ=255) aaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGa > 1:412581/1‑141 (MQ=255) aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTATGGAAATAGCGTGAAATAATCAGAGGGGTCGG‑TTGaa‑a > 1:120920/1‑141 (MQ=255) tttttCGCTGAAAATATTTATAGATATAATTCACACTCATTGCGGTTGAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAGATAATCAGAGGAATCGT‑TTGAA‑ATCATCata > 1:344246/1‑141 (MQ=37) gAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATcgcg < 1:125471/141‑1 (MQ=255) aGATATAACTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGt < 1:252879/141‑1 (MQ=255) gATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTg < 1:199104/141‑1 (MQ=255) taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATGGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:102751/1‑141 (MQ=255) taATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCGGCGTAGTAATCGCGCGAAAATCACGTGAaat > 1:90612/1‑141 (MQ=255) taaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc > 1:18088/1‑141 (MQ=255) aattaattAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAAACaga > 1:390294/1‑141 (MQ=255) attaattaATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag < 1:36540/141‑1 (MQ=255) tcgcgtgaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa > 1:482573‑M1/59‑141 (MQ=255) gcgtgaaataatcagaggaatcgttttaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat > 1:458640‑M1/57‑141 (MQ=255) aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAat > 1:476473/1‑141 (MQ=255) aGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAACCGTTTGAAat > 1:267660/1‑141 (MQ=255) ccAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatca > 1:149157/1‑141 (MQ=255) cAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcat > 1:199673/1‑141 (MQ=255) gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAActcatc < 1:444759‑M1/89‑1 (MQ=255) gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc > 1:125674‑M1/53‑141 (MQ=255) gaaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc < 1:444744‑M1/89‑1 (MQ=255) aGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAatcatc > 1:160311/1‑141 (MQ=255) aaataatcagaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGTAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAA‑TCATCgt > 1:238538‑M1/52‑141 (MQ=255) tAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgaag > 1:223342/1‑141 (MQ=255) tAATGTAGTCTTAATAGTTGTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGTAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgtag > 1:373549/1‑141 (MQ=255) agaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc > 1:187964‑M1/44‑141 (MQ=255) agaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATc < 1:274133‑M1/98‑1 (MQ=255) gaggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg > 1:68182‑M1/43‑141 (MQ=255) ccgaatcggttgaaatcctgggagcaatcgcgcgaaaatgaCGGGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc > 1:480671‑M1/42‑141 (MQ=255) aggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAACTAATCAGAGGAAGCGTTTGAAATCATCGTAGTAAgcgc < 1:126561‑M1/100‑1 (MQ=255) aggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc > 1:232567‑M1/42‑141 (MQ=255) aggaatcgtttgaaaatatcgtagtgatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGtaatggc < 1:249740‑M1/100‑4 (MQ=255) ggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:39481‑M1/41‑141 (MQ=255) ggaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg < 1:413060‑M1/101‑1 (MQ=255) ggaatcgtttgaaaacatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:442937‑M1/41‑141 (MQ=255) gcgatcgtttgaaaacatccttataatcgtgtgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcg > 1:428520‑M1/41‑141 (MQ=255) gaatcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATGGATTGAAATCAGCGTAGTAAtcgcgg < 1:191885‑M1/102‑2 (MQ=255) aatcgtttgaaaacatcctagaaatcgcgcgaaaatcaCGTGAAATAATCAG‑‑GAATCGTGTTGTATATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg > 1:491999‑M1/39‑141 (MQ=255) aatcgtctgaaataagtgtagaaatggggcgaaaatcgCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgcgcg > 1:430623‑M1/39‑141 (MQ=255) tAATCGTGCTGAAATACGAACAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGACGAAAACGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTAATCGCGCGa > 1:313711/1‑141 (MQ=17) tcgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaa < 1:205045‑M1/105‑1 (MQ=255) cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCCGAGAAATCGTTTGAAATGATCGTAGTaatcgcgcggaa < 1:422440‑M1/106‑4 (MQ=255) cgtttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaa < 1:28956‑M1/106‑1 (MQ=255) gtgttaaatcaacgtagtaatcgcgcgaaaatcaCGGGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa > 1:228439‑M1/35‑141 (MQ=255) tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt > 1:468466‑M1/34‑141 (MQ=255) tttgaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt < 1:11221‑M1/108‑1 (MQ=255) tttgaaatcatcgtaataatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt > 1:16468‑M1/34‑141 (MQ=255) tttgaaaccatcgtagtaatcgtgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt > 1:481358‑M1/34‑141 (MQ=255) ggtgacatcatagtagtaatctcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt > 1:39137‑M1/34‑141 (MQ=255) cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTCGTAATCGCGCGaaatt > 1:70575/1‑139 (MQ=255) cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaaa > 1:126331/1‑140 (MQ=255) ttgaaaacatagtagcaatagcgcgaaaatcaCGTGAAACAATCAGAGGAAACGT‑TTTAA‑AACATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATc > 1:265001‑M1/33‑141 (MQ=255) gaaatcatctttgtaatctcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc > 1:221429‑M1/31‑141 (MQ=255) gaaatcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATGAGGGGAATCGGTTGGAATCATCGTAGTAAACGCGCGAAAATCAc < 1:248215‑M1/111‑1 (MQ=255) aatcatcctagtaatcgcgtgaaaatcaCGTGAAACAATCAACGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt > 1:467191‑M1/29‑141 (MQ=255) tcatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATcacggga < 1:193283‑M1/115‑4 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:140361/1‑141 (MQ=255) aaaTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGa > 1:468864/1‑141 (MQ=255) aatcgtagtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaa > 1:473320‑M1/26‑141 (MQ=255) aaTACGAAAAATGTTGTGGAAATCGCGTGAAAAGATCAGAGGAATCGG‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACTTGaa < 1:339941/141‑1 (MQ=255) gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa < 1:475752‑M1/123‑1 (MQ=255) gtaatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCa < 1:21531‑M1/123‑1 (MQ=255) aaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGTCTTATACGTGAAATAATCTGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCG‑AAATCACGTGAAATAATCag < 1:494199/141‑1 (MQ=14) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga > 1:315502‑M1/17‑141 (MQ=255) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:157938‑M1/125‑1 (MQ=255) aatcgcgcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga < 1:475758‑M1/125‑1 (MQ=255) gttgtGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGa > 1:345539/1‑141 (MQ=38) ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGCAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGGGCGAATATCACGTGAAATAATCAGAGGaa > 1:432887/1‑141 (MQ=255) gcgaaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAGCGCGCCAAAATCACGAGAAACAATCACAGGAATc < 1:318698‑M1/131‑1 (MQ=255) cgaaaatcaCGTGAAATAATCAGAAGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg > 1:373251‑M1/10‑141 (MQ=255) gAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt < 1:420656/141‑1 (MQ=33) aaaatccAGTGAAATACTCAGAGGCATTGT‑TTGAA‑ATCATCGTAGGAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt > 1:140745‑M1/8‑141 (MQ=255) aaaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt > 1:2709‑M1/8‑141 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGttt < 1:408166‑M1/135‑1 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGATATAATCAGAGGAATCGttt > 1:299597‑M1/7‑141 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATGGttt < 1:387278‑M1/135‑1 (MQ=255) aaatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt < 1:323551‑M1/135‑1 (MQ=255) aaatcaCATAAAATAACCATAGGAATCGC‑TTGAA‑ATCATCCTAGTAAACGCGCCAAAATCACGTGAAATAATCAGAGGAATCGTTTGAACGCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt > 1:193552‑M1/7‑141 (MQ=255) agccaCGGGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:488081‑M1/6‑141 (MQ=255) aatcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAACGCGCGAAAATCACGTAAAATAATCAGAGGAAtcgtgtg < 1:462331‑M1/136‑4 (MQ=255) aatcaCGGGAAATATGCAGAGGAATCGT‑TCTAA‑ACCTTCGCAGCAACCGCGCCAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:441010‑M1/6‑141 (MQ=255) aatcaCGGGAAATAATCAGAGGAAGCGT‑TTTAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:29818‑M1/6‑141 (MQ=255) aatcaCGGGAAATAACCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg > 1:73473‑M1/6‑141 (MQ=255) atcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa < 1:385086‑M1/137‑1 (MQ=255) atcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGa > 1:474054‑M1/5‑141 (MQ=255) tcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATTGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa < 1:431741‑M1/138‑1 (MQ=255) tcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCTTCGCAGTAATCGCGCGAAAATCACGGGAAATAATCAGAGGAATCGTTTGaa < 1:235928‑M1/138‑1 (MQ=255) tcaCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa < 1:332267‑M1/138‑1 (MQ=255) caCGTGAAATAATCAGAGGCATCGT‑GTGAA‑ATCATCGTAGTAATAGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa < 1:273859‑M1/139‑1 (MQ=255) caCGTGAAATAATCAGACGAACGCT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAACCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa > 1:417107‑M1/3‑141 (MQ=255) caCGTGAAAGAATTAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGTAATCGTTTGaaa > 1:258973‑M1/3‑141 (MQ=255) aCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAt < 1:43800‑M1/140‑1 (MQ=255) | TGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGT‑TTGAA‑ATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAAT > USA300TCH1516_ALE/52356‑52634 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |