| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 24406 = | 96 (0.990) | 5 (0.060) | 3/240 | NT | 5.7% | intergenic (+398/‑88) | USA300HOU_pUSA300HOUMR0029/USA300HOU_pUSA300HOUMR0030 | macrolide 2'‑phosphotransferase/Sin recombinase |
| ? | CP000731 | 24471 = | 77 (0.860) | intergenic (+463/‑23) | USA300HOU_pUSA300HOUMR0029/USA300HOU_pUSA300HOUMR0030 | macrolide 2'‑phosphotransferase/Sin recombinase | |||||
TATCCAATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/24554‑24406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagggtgtaTATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGACAATTGGATAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGGGA > CP000731/24471‑24604 TATCCAATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTT < 1:190107/141‑1 ATCCAATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTA < 1:305645/141‑1 CCAATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGG < 1:509728/141‑1 agTTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGT < 1:65205/139‑1 AATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGT < 2:208564/141‑1 AATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGT > 1:432380/1‑141 ATTGTCTCTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTG < 2:259499/141‑1 TTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGT < 1:59530/141‑1 TTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGT < 2:86454/141‑1 TTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGT < 2:181898/141‑1 TTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGT < 1:531401/141‑1 TGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTA < 2:233598/141‑1 AATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAA > 2:10832/1‑141 AATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAA > 2:235800/1‑141 TATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGA > 1:388131/1‑141 ATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGAC > 1:129217/1‑141 ATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGAC > 2:43506/1‑141 TAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGACAATTGGATAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGG > 1:269020/1‑141 TAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGACAATTGGATAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGG < 1:134472/141‑1 TAGGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCAATAGATCAAAATTTAGAAAGACAATTGGATAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGG > 2:253410/1‑141 GGGTGTATATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGACAATTGGGTAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGGGA < 1:379273/141‑1 TATCCAATTGTCTTTCTAAATTTTGATCTATCGATGATACTCTCGCATAACCTATAATCATTCATCTTCACTCCATAATAAATATACACCCTAATCATACGTTTTAATTGTTATAATTTCAACAATTCTTTTTGTATGGTTAGGGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/24554‑24406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttagggtgtaTATTTATTATGGAGTGAAGATGAATGATTATAGGTTATGCGAGAGTATCATCGATAGATCAAAATTTAGAAAGACAATTGGATAATTTAAAGACGTTTGGTGTGGAGAAAATCTTTACAGAGAAACAGTCGGGA > CP000731/24471‑24604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |