New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2303981 =	36 (0.780)	3 (0.070)	3/246	NT	8.4%	coding (1158/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase
	?	USA300TCH1516_ALE	2303997 =	31 (0.710)					coding (1142/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase

ACAACCAACTTTAAAATTCGAATTGTTCTATTTTGACATATTTACTTATGGAACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAACTGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2304122‑2303981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaacaCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCAA  >  USA300TCH1516_ALE/2303997‑2304135                                                                                                                                                                                                                                                                                           ACAACCAACTTTAAAATTCGAATTGTTCTATTTTGACATATTTACTTATGGAACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAACTGCAAC                                                                                                                                              >  2:289257/1‑141                  TCGAATTGTTCTATTTTGACATATTTACTTATGGAACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTT                                                                                                                             <  1:598893/141‑1                                                ATGGAACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAGTTGCAACACTATCTTGACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTC                                                                                               <  1:416202/141‑1                                                     ACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGA                                                                                          <  1:436119/141‑1                                                                                                                                      ACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATA         >  2:161814/1‑141                                                                                                                                          CAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACAC     >  2:117299/1‑141                                                                                                                                             CACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCAA  >  1:613139/1‑141                                                                                                                                                                                                                                                                                           ACAACCAACTTTAAAATTCGAATTGTTCTATTTTGACATATTTACTTATGGAACTAGTTTTGTCACGTTACAAGTTCCTAGAGAAGAAGAATTTTCACCTCTTAAAAATAAAGAAGGTAAAGATAGTGTTGCAACTGCAACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/2304122‑2303981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaacaCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCAA  >  USA300TCH1516_ALE/2303997‑2304135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.