New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2303981 =	36 (0.780)	3 (0.070)	3/246	NT	8.4%	coding (1158/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase
	?	USA300TCH1516_ALE	2303997 =	31 (0.710)					coding (1142/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase

CATTACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATT  >  USA300TCH1516_ALE/2303842‑2304108                                                                                                                                            |                                                                                                                                ttggtgttattgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagtg                                                                                                                                >  1:613139‑M1/140‑141 (MQ=255)   ttACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgtt                                                                                                                              >  1:627488/1‑141 (MQ=255)    gtgttattgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTgttg                                                                                                                             >  2:117299‑M1/137‑141 (MQ=255)      ccAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGGCATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgttgca                                                                                                                           >  2:139409/1‑141 (MQ=255)        tattgaacaaccaactttaaaattcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTgttgcagt                                                                                                                         >  2:161814‑M1/133‑141 (MQ=255)            tcttctCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTgttgcagttgca                                                                                                                     <  1:92550/141‑1 (MQ=255)             cttctCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCaa                                                                                                                    <  2:230838/141‑1 (MQ=255)              ttctCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAac                                                                                                                   <  1:437059/141‑1 (MQ=255)                ctcCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAacac                                                                                                                 >  1:331943/1‑141 (MQ=255)                         aTAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTAc                                                                                                        >  2:56450/1‑141 (MQ=255)                             aGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACcttc                                                                                                    >  1:311364/1‑141 (MQ=255)                                  tgatATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAt                                                                                               <  1:189277/141‑1 (MQ=255)                                    atatCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAttt                                                                                             <  1:430980/141‑1 (MQ=255)                                         cTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAag                                                                                        <  2:153639/141‑1 (MQ=255)                                         cTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAag                                                                                        <  1:224972/141‑1 (MQ=255)                                              aTGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTg                                                                                   <  2:199337/141‑1 (MQ=255)                                                 tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTACATTAACACCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                <  2:13712/141‑1 (MQ=255)                                                 tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                <  1:505501/141‑1 (MQ=255)                                                 tttCTACGATTGTGTCATTACTTTTTTAAGTTGATTAGGACATCATAGTGCCCGCCTATCTTTAATTTCAACCCATTTTACCAATATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                <  2:13628/141‑1 (MQ=255)                                                   tCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAt                                                                              <  2:72505/141‑1 (MQ=255)                                                       cGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAttctt                                                                          <  2:240500/141‑1 (MQ=255)                                                                cATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAg                                                                 >  1:471488/1‑141 (MQ=255)                                                                 aTTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAGAATTCTTCTTCTCTAgg                                                                >  1:293355/1‑141 (MQ=255)                                                                  ttACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGa                                                               >  1:690315/1‑141 (MQ=255)                                                                                 gATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACa                                                <  1:595397/141‑1 (MQ=255)                                                                                 gATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACa                                                >  2:258130/1‑141 (MQ=255)                                                                                  aTTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaa                                               <  1:27459/141‑1 (MQ=255)                                                                                   tttGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaaa                                              >  1:770773/1‑141 (MQ=255)                                                                                     tGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAAc                                            <  1:137696/141‑1 (MQ=255)                                                                                       gACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTa                                          >  1:86933/1‑141 (MQ=255)                                                                                         tcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGt                                        <  1:436119‑M1/90‑1 (MQ=255)                                                                                           tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                      >  1:432852/1‑141 (MQ=255)                                                                                           tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                      >  1:145787/1‑141 (MQ=255)                                                                                              gagaagaagaattttcacctcttaaaaataaagaaggtcaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCAt                                   <  1:416202‑M1/95‑1 (MQ=255)                                                                                                        cTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAatat                         <  1:674439/141‑1 (MQ=255)                                                                                                         tATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATg                        <  1:151968/141‑1 (MQ=255)                                                                                                                  attaaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAg               >  1:525246/1‑141 (MQ=255)                                                                                                                    taaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGaa             >  2:133585/1‑141 (MQ=255)                                                                                                                    taaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGaa             <  2:254095/141‑1 (MQ=255)                                                                                                                     aaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAAc            <  1:256488/141‑1 (MQ=255)                                                                                                                       aCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACaa          >  1:309477/1‑141 (MQ=255)                                                                                                                            aagaaggtaaagatagTGTTGCAACTGCAACAGAAGATTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGa     <  1:598893‑M1/125‑1 (MQ=255)                                                                                                                               tACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAAtt  <  2:298738/141‑1 (MQ=255)                                                                                                                                            |                                                                                                                                CATTACCAATTTCTTCTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATT  >  USA300TCH1516_ALE/2303842‑2304108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.