New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2303981 =	36 (0.780)	3 (0.070)	3/246	NT	8.4%	coding (1158/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase
	?	USA300TCH1516_ALE	2303997 =	31 (0.710)					coding (1142/1188 nt)	USA300HOU_RS11755	putative uridylyltransferase

CTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCAA  >  USA300TCH1516_ALE/2303857‑2304135                                                                                                                                             |                                                                                                                                           ctcCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAacac                                                                                                                                            >  1:331943/1‑141 (MQ=255)          aTAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTAc                                                                                                                                   >  2:56450/1‑141 (MQ=255)              aGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACcttc                                                                                                                               >  1:311364/1‑141 (MQ=255)                tcgaattgttctattttgacatatttacttatggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaatcttctgttgcagttgcaacaCTATCTTTACcttctt                                                                                                                             <  1:598893‑M2/16‑1 (MQ=255)                   tgatATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAt                                                                                                                          <  1:189277/141‑1 (MQ=255)                     atatCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTAttt                                                                                                                        <  1:430980/141‑1 (MQ=255)                          cTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAag                                                                                                                   <  1:224972/141‑1 (MQ=255)                          cTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAag                                                                                                                   <  2:153639/141‑1 (MQ=255)                               aTGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTg                                                                                                              <  2:199337/141‑1 (MQ=255)                                  tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTACATTAACACCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                                           <  2:13712/141‑1 (MQ=255)                                  tttCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                                           <  1:505501/141‑1 (MQ=255)                                  tttCTACGATTGTGTCATTACTTTTTTAAGTTGATTAGGACATCATAGTGCCCGCCTATCTTTAATTTCAACCCATTTTACCAATATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGaaa                                                                                                           <  2:13628/141‑1 (MQ=255)                                    tCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAt                                                                                                         <  2:72505/141‑1 (MQ=255)                                        cGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAAttctt                                                                                                     <  2:240500/141‑1 (MQ=255)                                              atggaactagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagtgttgcagttgcaacaCTATCTTGACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTtctc                                                                                               <  1:416202‑M2/46‑1 (MQ=255)                                                 cATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAg                                                                                            >  1:471488/1‑141 (MQ=255)                                                  aTTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAGAATTCTTCTTCTCTAgg                                                                                           >  1:293355/1‑141 (MQ=255)                                                   ttACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGa                                                                                          >  1:690315/1‑141 (MQ=255)                                                   actagttttgtcacgttacaagttcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagtgttgcagttgcaacaCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGa                                                                                          <  1:436119‑M2/51‑1 (MQ=255)                                                                  gATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACa                                                                           >  2:258130/1‑141 (MQ=255)                                                                  gATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACa                                                                           <  1:595397/141‑1 (MQ=255)                                                                   aTTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaa                                                                          <  1:27459/141‑1 (MQ=255)                                                                    tttGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACaaa                                                                         >  1:770773/1‑141 (MQ=255)                                                                      tGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAAc                                                                       <  1:137696/141‑1 (MQ=255)                                                                        gACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTa                                                                     >  1:86933/1‑141 (MQ=255)                                                                          tcctagagaagaagaattttcacctcttaaaaataaagaaggtaaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGt                                                                   <  1:436119‑M1/90‑1 (MQ=255)                                                                            tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                                                 >  1:145787/1‑141 (MQ=255)                                                                            tcatAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTc                                                                 >  1:432852/1‑141 (MQ=255)                                                                               gagaagaagaattttcacctcttaaaaataaagaaggtcaagatagTGTTGCAACTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCAt                                                              <  1:416202‑M1/95‑1 (MQ=255)                                                                                         cTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAatat                                                    <  1:674439/141‑1 (MQ=255)                                                                                          tATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATg                                                   <  1:151968/141‑1 (MQ=255)                                                                                                   attaaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAg                                          >  1:525246/1‑141 (MQ=255)                                                                                                     taaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGaa                                        >  2:133585/1‑141 (MQ=255)                                                                                                     taaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGaa                                        <  2:254095/141‑1 (MQ=255)                                                                                                      aaaCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAAc                                       <  1:256488/141‑1 (MQ=255)                                                                                                        aCCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACaa                                     >  1:309477/1‑141 (MQ=255)                                                                                                             aagaaggtaaagatagTGTTGCAACTGCAACAGAAGATTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGa                                <  1:598893‑M1/125‑1 (MQ=255)                                                                                                                tACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAAtt                             <  2:298738/141‑1 (MQ=255)                                                                                                                              GTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGgttgt               >  2:289257‑M1/1‑141 (MQ=255)                                                                                                                                    actgcaacaCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATa         >  2:161814‑M2/10‑141 (MQ=255)                                                                                                                                     ttgcaACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATaa        <  2:54944/141‑1 (MQ=255)                                                                                                                                        caacaCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAacac     >  2:117299‑M2/6‑141 (MQ=255)                                                                                                                                           caCTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCaa  >  1:613139‑M2/3‑141 (MQ=255)                                                                                                                                             |                                                                                                                                           CTCCAAATGATAAAGGGATGATATCCTTAAATGTTTCTACGATTGTGTCATTACTTTTTTTAGTTGATTTGGACATCATAGTCACCGCCTATCATTAAATTAAACCCATTCTACGTAAATCTTCTGTTGCAGTTGCAACACTATCTTTACCTTCTTTATTTTTAAGAGGTGAAAATTCTTCTTCTCTAGGAACTTGTAACGTGACAAAACTAGTTCCATAAGTAAATATGTCAAAATAGAACAATTCGAATTTTAAAGTTGGTTGTTCAATAACACCAA  >  USA300TCH1516_ALE/2303857‑2304135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.