| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1181842 = | 186 (0.910) | 34 (0.190) | 12/144 | NT | 17.4% | intergenic (+409/+65) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg |
| ? | USA300TCH1516_ALE | 1181881 = | 156 (0.850) | intergenic (+448/+26) | USA300HOU_RS05885/USA300TCH1516_01103 | hypothetical protein/tRNA‑Arg | |||||
ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181939‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > USA300TCH1516_ALE/1181881‑1181970 ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTT > 1:2791260/1‑91ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTT > 1:2791248/1‑91ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTT > 1:1771292/1‑91 TCGGTCGGGGGTTCGACTCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT < 1:3214192/91‑1 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 1:1321870/1‑91 TCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTT > 1:2298317/1‑91 TCGGTCGGGGGTGCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAGAGAGTTCCGTGATTACGGGGCTCTTT < 2:3282463/91‑1 CGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTT < 2:2042087/91‑1 CGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTT < 2:1946317/91‑1 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT > 1:2982454/1‑91 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT < 1:528572/91‑1 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT < 2:1427244/91‑1 GGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTT < 2:1427272/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG < 1:3926827/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG < 2:2663676/91‑1 GTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTG > 1:2680102/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT > 2:1279384/1‑91 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:909026/91‑1 TCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGT < 1:2564775/91‑1 aGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT < 2:3933971/90‑1 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT > 2:2558617/1‑91 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT < 1:3783914/91‑1 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT < 2:2234862/91‑1 CGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTT < 2:1715145/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 1:3103390/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:274122/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 1:3202689/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 1:3202713/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:274070/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT > 2:272867/1‑91 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 2:292329/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:1906764/91‑1 GGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 1:1909172/91‑1 GGGGGTTCGAAGCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT < 2:2471364/91‑1 CCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAAT > 1:1643819/1‑91 CATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTTGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCG > 2:1973984/1‑91 AAACAAAAGAGTTCCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCG > 1:2159678/1‑91 CAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGAC > 1:2549710/1‑91 CAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGAC > 1:2551318/1‑91 CAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGAC > 1:3271108/1‑91 AAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCG > 1:181235/1‑91 AAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCG > 1:1680910/1‑91 AAAGAGTTCCGTGATTACGGGGCTCTTTTTGCTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCG > 2:2405172/1‑91 AAGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGA > 1:3252590/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:2212432/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:373748/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:1601169/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:1601184/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:2473489/1‑91 AGAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAT > 1:1235563/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 2:3042095/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 2:2352044/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 2:1168399/1‑91 GAGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATG > 2:3661564/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 2:3083488/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:98664/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:3264003/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:671807/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:2426660/1‑91 AGTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGG > 1:3488859/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 2:834265/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:1093009/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:2983168/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:2970732/1‑91 GTTCCGTGATTACGGGGCTCTTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGC > 1:2970609/1‑91 CCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAG > 1:3864370/1‑91 CCGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAG > 1:134144/1‑91 CGTGATTACGGGGCTC‑TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGA > 1:780938/1‑91 TTTTGTTTGGTAATGCGTATAAAACTACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCCTTGCTCTATC > 2:48391/1‑91 TTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATC > 1:3471606/1‑91 TTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCA < 1:3869266/91‑1 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG < 1:1678056/91‑1 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG < 1:1678308/91‑1 TGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAG > 2:2603931/1‑91 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC > 2:3366573/1‑91 GTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGC < 1:1718554/91‑1 TTTGGTAATGCGTATAAAAATACCTATAAGCGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCT < 2:2108495/91‑1 TTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCT < 2:715609/91‑1 TTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCT < 2:774201/91‑1 TTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCT < 2:3760963/91‑1 TTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTG < 2:16324/91‑1 TTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTG < 2:1519885/91‑1 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA < 1:371832/91‑1 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > 2:2665277/1‑91 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > 2:1360196/1‑91 TGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > 1:1045272/1‑91 ATCGGTCGGGGGTTCGAATCCCTCCCAGGACGTTTATAGGTATTTTTATACGCATTACCAAACAAAAGAGTTCCGTGATTACGGGGCTCTTTTTGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1181939‑1181842‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGA > USA300TCH1516_ALE/1181881‑1181970 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |