BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	186 (0.910)	34 (0.190)	12/144	NT	17.4%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	156 (0.850)	34 (0.190)	12/144	NT	17.4%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 267 total aligned reads displayed.

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

tcagctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattacca                                                                                            <  1:371832‑M1/1‑1 (MQ=255)

cGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaa                                                                                            <  1:103380/91‑1 (MQ=255)

  agctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaa                                                                                          <  2:3760963‑M1/3‑1 (MQ=255)

  agctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgcttataggtatttttatacgcattaccaaa                                                                                          <  2:2108495‑M1/3‑1 (MQ=255)

    tAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaaca                                                                                        >  2:922817/1‑91 (MQ=255)

    ctggatagagcaatggccttctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccaaaca                                                                                        <  1:1678308‑M1/5‑1 (MQ=255)

     aaGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaa                                                                                       >  1:2492494/1‑91 (MQ=255)

     aaGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTcaaaacaa                                                                                       <  1:1452996/91‑1 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAaga                                                                                  >  1:513231/1‑91 (MQ=255)

          tGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAaga                                                                                  >  1:2098175/1‑91 (MQ=255)

           gCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAagag                                                                                 <  1:194574/91‑1 (MQ=255)

            cTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGc                                                                                <  2:2577118/91‑1 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              >  2:607194/1‑91 (MQ=255)

              tGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGccc                                                                              <  2:2280940/91‑1 (MQ=255)

               gTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGcccc                                                                             <  1:710796/91‑1 (MQ=255)

                ttttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCACCATACTATATTCCTGAAATTCAAAACAAAAAGAGCCCCg                                                                            >  2:410612/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          >  1:2060579/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          >  1:1011217/1‑91 (MQ=255)

                  ttAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTa                                                                          <  1:481250/91‑1 (MQ=255)

                    aaTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAAt                                                                        >  2:2582723/1‑91 (MQ=255)

                     aTTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATc                                                                       >  1:8757/1‑91 (MQ=255)

                       tACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCAc                                                                     <  2:608696/91‑1 (MQ=255)

                       tACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCAc                                                                     >  1:2512744/1‑91 (MQ=255)

                        ctaagccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAA‑GAGCCCCGTAATCACgg                                                                   >  1:134144‑M1/67‑91 (MQ=255)

                        aCTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACg                                                                    >  1:3282237/1‑91 (MQ=255)

                        aCTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACg                                                                    >  1:3269155/1‑91 (MQ=255)

                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   >  2:102362/1‑91 (MQ=255)

                         cTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACgg                                                                   <  1:2934335/91‑1 (MQ=255)

                          tGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGa                                                                  <  1:2613559/91‑1 (MQ=255)

                           gTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGaa                                                                 >  2:3197421/1‑91 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  2:834265‑M1/63‑91 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  1:1093009‑M1/63‑91 (MQ=255)

                            gccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAc                                                                >  1:2983168‑M1/63‑91 (MQ=255)

                             ccatcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAAct                                                               >  2:3083488‑M1/62‑91 (MQ=255)

                              ttttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              <  2:2638989/91‑1 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  2:3042095‑M1/61‑91 (MQ=255)

                              catcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActc                                                              >  2:2352044‑M1/61‑91 (MQ=255)

                               tttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             <  1:3485874/91‑1 (MQ=255)

                               atcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             >  1:1601169‑M1/60‑91 (MQ=255)

                               atcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAActct                                                             >  1:1235563‑M1/60‑91 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  1:667114/91‑1 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            >  1:2546790/1‑91 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            <  1:1191060/91‑1 (MQ=255)

                                ttCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            >  2:3119845/1‑91 (MQ=255)

                                tcggtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCtt                                                            >  1:3252590‑M1/59‑91 (MQ=255)

                                  cGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAAC‑AAAAGAGTTCCGTGATTACGGGGCTCttttt                                                         <  2:2087144/91‑2 (MQ=21)

                                   gtcgggggttcgaatccctcccaggacgtttataggtatttttatacgcattaccAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttg                                                         >  1:2551318‑M1/56‑91 (MQ=255)

                                   ggggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttg                                                         <  2:1346814/91‑1 (MQ=255)

                                     ggCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgtt                                                       >  2:1268939/1‑91 (MQ=255)

                                      gCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGTTCCGTGATTACGGGGCTCtttttgtt                                                      <  1:1389901/91‑5 (MQ=21)

                                      gCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgttt                                                      >  2:44936/1‑91 (MQ=255)

                                      gCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTtttgttt                                                      <  2:3641779/91‑1 (MQ=255)

                                       cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCTCGTAATCACGGAACTCTtttgtttg                                                     >  1:3690850/1‑91 (MQ=255)

                                        ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    >  1:3911181/1‑91 (MQ=255)

                                        ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                    <  1:1713893/91‑1 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:1407448/91‑1 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 >  2:3822354/1‑91 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  2:3300505/91‑1 (MQ=255)

                                           tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                 <  1:3795341/91‑1 (MQ=255)

                                             cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                               >  1:3162131/1‑91 (MQ=255)

                                             cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                               >  2:21636/1‑91 (MQ=255)

                                              gggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGc                                              >  2:1152663/1‑91 (MQ=255)

                                              gggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGc                                              <  2:767535/91‑1 (MQ=255)

                                                gggACGTTTTGGTGACGTATCATACTATATTATTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGt                                            <  1:3388610/91‑1 (MQ=255)

                                                   aCGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCAGTAATCACGGAACTCTTTTGTTTGGTAATGCGtata                                         <  2:710585/91‑1 (MQ=255)

                                                     gTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaaa                                       <  2:3405533/91‑1 (MQ=255)

                                                        ttGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAAt                                    <  1:2863608/91‑1 (MQ=255)

                                                              aCGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCtat                              <  1:386710/91‑1 (MQ=255)

                                                                gCATCATACTATATTACTGAAATAAAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                            <  2:1961063/91‑1 (MQ=255)

                                                                 catcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaaa                           <  1:2719210/91‑1 (MQ=255)

                                                                 catcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaaa                           >  1:1794341/1‑91 (MQ=255)

                                                                    catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGt                        >  2:3180194/1‑91 (MQ=255)

                                                                     atACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTc                       >  2:1553678/1‑91 (MQ=255)

                                                                     atACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTc                       <  2:1802260/91‑1 (MQ=255)

                                                                      tACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGAAATGCGTATAAAAATACCTATAAACGTcc                      >  1:2185635/1‑91 (MQ=255)

                                                                       aCTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCt                     >  2:601463/1‑91 (MQ=255)

                                                                        atttttatacgcattaccAAACAAAA‑GAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   >  1:1643819‑M1/19‑91 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   >  1:408788/1‑91 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   <  2:3895374/91‑1 (MQ=255)

                                                                         tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                   >  1:3852306/1‑91 (MQ=255)

                                                                          atatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggg                  <  2:774978/91‑1 (MQ=255)

                                                                           tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                 <  1:1517952/91‑1 (MQ=255)

                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               <  1:2353386/91‑1 (MQ=255)

                                                                             ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg               >  1:3506906/1‑91 (MQ=255)

                                                                              tACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggg              <  2:2455037/91‑1 (MQ=255)

                                                                               aCTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggga             <  1:185599/91‑1 (MQ=255)

                                                                                cTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAt            <  1:2959733/91‑1 (MQ=255)

                                                                                 tGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAtt           >  1:364828/1‑91 (MQ=255)

                                                                                 tGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAtt           <  1:792266/91‑1 (MQ=255)

                                                                                   aaaTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCg         <  1:2400159/91‑1 (MQ=255)

                                                                                    aaTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGa        <  1:958656/91‑1 (MQ=255)

                                                                                       tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc     <  2:1379438/91‑1 (MQ=255)

                                                                                        caaagcaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  2:3488318/91‑1 (MQ=255)

                                                                                        caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc    <  1:67181/91‑1 (MQ=255)

                                                                                         aaaacaaaaAGAGCCCCGTAATCACGGAGCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc   <  2:1099414/91‑1 (MQ=255)

                                                                                         aaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc   >  2:2869455/1‑91 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  >  2:272867‑M1/1‑91 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  >  2:274122‑M1/1‑91 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  >  1:3103390‑M1/1‑91 (MQ=255)

                                                                                          AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc  <  1:1909172‑M1/91‑1 (MQ=255)

CGAATAAGCATGCTTGTTTTAATTACTGTATTTTCGGGGCTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCC  >  USA300TCH1516_ALE/1181752‑1181932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.