BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1181842 =	186 (0.910)	34 (0.190)	12/144	NT	17.4%	intergenic (+409/+65)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg
*	?	USA300TCH1516_ALE	1181881 =	156 (0.850)	34 (0.190)	12/144	NT	17.4%	intergenic (+448/+26)	USA300HOU_RS05885/USA300TCH1516_01103	hypothetical protein/tRNA‑Arg

Only 100 of 272 total aligned reads displayed.

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAG  >  USA300TCH1516_ALE/1181791‑1181971

cTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCTCGTAATCACGGAACTCTtttgtttg                                                                                            >  1:3690850/1‑91 (MQ=255)

 ttATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTgg                                                                                           <  1:1713893/91‑1 (MQ=255)

  tATGCGGGGGACGTTTTGGTGACGCATTATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGt                                                                                          >  2:858034/1‑91 (MQ=255)

    tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                                                        <  2:3300505/91‑1 (MQ=255)

    tGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTaa                                                                                        <  1:1407448/91‑1 (MQ=255)

      cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                                                                      >  1:3162131/1‑91 (MQ=255)

      cGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATg                                                                                      >  1:1670811/1‑91 (MQ=255)

       gggggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGc                                                                                     <  2:767535/91‑1 (MQ=255)

         gggACGTTTTGGTGACGTATCATACTATATTATTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGt                                                                                   <  1:3388610/91‑1 (MQ=255)

          ggACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGta                                                                                  >  1:479949/1‑91 (MQ=255)

             cGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATaa                                                                               >  2:3109041/1‑91 (MQ=255)

                  tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                                                          <  1:509601/91‑1 (MQ=255)

                  tGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATa                                                                          >  1:1374166/1‑91 (MQ=255)

                    gTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATAcc                                                                        >  1:2611557/1‑91 (MQ=255)

                     tGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCt                                                                       <  1:3842745/91‑1 (MQ=255)

                         gCATCATACTATATTACTGAAATAAAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaa                                                                   <  2:1961063/91‑1 (MQ=255)

                          catcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaaa                                                                  >  1:1794308/1‑91 (MQ=255)

                          catcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaaa                                                                  <  1:2719210/91‑1 (MQ=255)

                          catcatACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATaaa                                                                  >  2:334873/1‑91 (MQ=255)

                             catACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGAGTATAAAAATACCTATAAACGt                                                               >  2:3181034/1‑91 (MQ=255)

                              atACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTc                                                              >  2:1553678/1‑91 (MQ=255)

                                 cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                                                           <  1:2249334/91‑1 (MQ=255)

                                 cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                                                           <  2:3478625/91‑1 (MQ=255)

                                 cTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTg                                                           <  2:3738854/91‑1 (MQ=255)

                                 atttttatacgcattaccAAACAAAA‑GAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                          >  1:1643819‑M1/19‑91 (MQ=255)

                                  tataTTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgg                                                          >  1:1194877/1‑91 (MQ=255)

                                   atatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggg                                                         <  2:774999/91‑1 (MQ=255)

                                    tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                                                        >  2:3861565/1‑91 (MQ=255)

                                    tatTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTggga                                                        <  1:1517952/91‑1 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                      >  1:944109/1‑91 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                      >  1:3506906/1‑91 (MQ=255)

                                      ttACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggagg                                                      <  1:2353386/91‑1 (MQ=255)

                                       tACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTgggaggg                                                     <  2:2455037/91‑1 (MQ=255)

                                          tGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAtt                                                  <  1:792266/91‑1 (MQ=255)

                                          tGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGAtt                                                  >  1:364828/1‑91 (MQ=255)

                                            cattaccaaacaaaagagttccgtgattacggggctctttttgtttTGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCg                                                >  2:1973984‑M2/47‑91 (MQ=255)

                                            aaaTTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCg                                                <  1:2400159/91‑1 (MQ=255)

                                                tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc                                            <  2:1379438/91‑1 (MQ=255)

                                                tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc                                            >  2:1104881/1‑91 (MQ=255)

                                                tCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcc                                            <  2:1905175/91‑1 (MQ=255)

                                                 caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc                                           >  1:1927709/1‑91 (MQ=255)

                                                 caaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccc                                           <  1:67181/91‑1 (MQ=255)

                                                  aaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc                                          <  2:1310134/91‑1 (MQ=255)

                                                  aaaacaaaaAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAcccc                                          >  2:2869455/1‑91 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                         >  2:274122‑M1/1‑91 (MQ=255)

                                                   AAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAAccccc                                         >  1:3202713‑M1/1‑91 (MQ=255)

                                                    aaacaaaagagttccgtgattacggggctcttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccg                                        >  1:2159678‑M2/39‑91 (MQ=255)

                                                    AACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccg                                        <  1:3783914‑M1/91‑1 (MQ=255)

                                                    AACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccg                                        >  2:2558617‑M1/1‑91 (MQ=255)

                                                     ACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccga                                       <  1:2564775‑M1/91‑1 (MQ=255)

                                                      caaaagagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgac                                      >  1:3271108‑M2/37‑91 (MQ=255)

                                                      CAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgac                                      <  1:3926827‑M1/91‑1 (MQ=255)

                                                       AAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgacc                                     >  1:2982454‑M1/1‑91 (MQ=255)

                                                         aagagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                   >  1:3252590‑M2/34‑91 (MQ=255)

                                                         AAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCccgaccga                                   >  1:1321870‑M1/1‑91 (MQ=255)

                                                          agagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                  >  1:1601169‑M2/33‑91 (MQ=255)

                                                          AAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGAt                                  >  1:2791260‑M1/1‑91 (MQ=255)

                                                           gagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 >  2:2352044‑M2/32‑91 (MQ=255)

                                                           gagttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 >  2:1168399‑M2/32‑91 (MQ=255)

                                                           agggCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 <  2:1351232/88‑1 (MQ=255)

                                                           agagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 >  2:174685/1‑91 (MQ=255)

                                                           agagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATg                                 <  1:2551218/91‑1 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTTATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                                >  2:1482537/1‑91 (MQ=255)

                                                            gagCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAAGACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                                <  1:1898802/91‑1 (MQ=255)

                                                            agttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATgg                                >  2:3083488‑M2/31‑91 (MQ=255)

                                                             gttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  1:2970609‑M2/30‑91 (MQ=255)

                                                             gttccgtgattacggggctctttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  1:1093009‑M2/30‑91 (MQ=255)

                                                             agCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGc                               >  1:2933727/1‑91 (MQ=255)

                                                              gCCCCGTAATCACGGAACTCTTTTGTTTGGTCATGCGTATAAAAATACCTATAAACGTCCTGGGAGGAATTCGAACCCCAGACCGATGGCt                              >  2:3021511/1‑91 (MQ=255)

                                                              gCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAACATACCTATGACCGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCt                              <  2:2607666/91‑1 (MQ=255)

                                                              gCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCt                              >  2:2642097/1‑91 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCttg                            >  2:3931894/1‑90 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            <  1:736390/91‑1 (MQ=255)

                                                                cccGTAATCACGGAACTCTTTTGTTTGGAAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTa                            >  2:570139/1‑91 (MQ=255)

                                                                 ccgtgattacggggctcttttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAg                           >  1:3864370‑M2/26‑91 (MQ=255)

                                                                      aTCACGGATCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGACCCCCCGACCGATGGCTTAGAAGGc                      <  1:2468104/91‑1 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGAGCGATGGCTTAGAAGGc                      >  2:3032490/1‑91 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGc                      <  2:270257/91‑1 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGc                      >  1:1828352/1‑91 (MQ=255)

                                                                      aTCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGc                      <  2:3557582/91‑1 (MQ=255)

                                                                       tCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGCACCCCCGACCGATGGCTTAGAAGGcc                     <  2:2251823/91‑1 (MQ=255)

                                                                        cACGGAACTCTTATGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCa                    >  1:3038037/1‑91 (MQ=255)

                                                                         aCGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAt                   <  1:2080858/91‑1 (MQ=255)

                                                                          cGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCAtt                  >  1:735226/1‑91 (MQ=255)

                                                                            gAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGc                <  1:1032794/91‑1 (MQ=255)

                                                                             aaCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGct               <  2:620350/91‑1 (MQ=255)

                                                                             aaCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGct               >  1:2905314/1‑91 (MQ=255)

                                                                              aCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGATGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctc              <  1:3418693/91‑1 (MQ=255)

                                                                              aCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctc              <  1:2860611/91‑1 (MQ=255)

                                                                              aCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctc              <  1:633796/91‑1 (MQ=255)

                                                                              aCTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCCTAGAAGGCCATTGctc              <  2:1048244/91‑1 (MQ=255)

                                                                               ctctTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGctct             <  1:1276483/91‑1 (MQ=255)

                                                                                  ttttgtttGGTAATGCGTATAAAACTACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCCTTGCTCTATc          >  2:48391‑M2/9‑91 (MQ=255)

                                                                                    ttgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCa        <  1:3869266‑M2/85‑1 (MQ=255)

                                                                                     tgtttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAg       <  1:1678308‑M2/86‑1 (MQ=255)

                                                                                       tttGGTAATGCGTATAAAAATACCTATAAGCGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCt     <  2:2108495‑M2/88‑1 (MQ=255)

                                                                                       tttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCt     <  2:3760963‑M2/88‑1 (MQ=255)

                                                                                       tttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCt     <  2:715609‑M2/88‑1 (MQ=255)

                                                                                        ttGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTg    <  2:16324‑M2/89‑1 (MQ=255)

                                                                                          ggTAATGGGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTAGCCAGCTGAg  <  1:1972564/91‑1 (MQ=255)

CTTATGCGGGGGACGTTTTGGTGACGCATCATACTATATTACTGAAATTCAAAACAAAAAGAGCCCCGTAATCACGGAACTCTTTTGTTTGGTAATGCGTATAAAAATACCTATAAACGTCCTGGGAGGGATTCGAACCCCCGACCGATGGCTTAGAAGGCCATTGCTCTATCCAGCTGAG  >  USA300TCH1516_ALE/1181791‑1181971

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.