| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1183547 = | 215 (1.060) | 16 (0.090) | 6/140 | NT | 8.0% | intergenic (+58/+51) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase |
| ? | USA300TCH1516_ALE | 1183585 = | 181 (1.020) | intergenic (+96/+13) | yfnB/USA300HOU_RS05910 | Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase | |||||
GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1183646‑1183547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG > USA300TCH1516_ALE/1183585‑1183673 GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAAACATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTT > 1:1355483/1‑91 AAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCG < 2:3867745/91‑1 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT > 2:1694133/1‑91 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT > 2:2867110/1‑91 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT < 2:2933050/91‑1 AGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGT > 1:2367184/1‑91 GCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTA > 2:734807/1‑91 GCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTA < 2:1800234/91‑1 CTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAG > 1:2617254/1‑91 CTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAG > 1:418358/1‑91 TAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGT > 1:538343/1‑91 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:2595884/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:2168155/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 2:2199143/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:466241/91‑1 AAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTG < 1:3484908/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:3346357/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:466566/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:3348336/91‑1 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT > 2:877805/1‑91 AAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 1:2967302/91‑1 AAAAGATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGT < 2:1945739/91‑1 AAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC < 2:789888/91‑1 AAATATAGAGGGACATGATGGCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC < 2:939536/91‑1 TCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAT > 2:1628945/1‑91 CGAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTT > 1:3158998/1‑91 GAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTC > 1:3218396/1‑91 GAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTC > 1:3220258/1‑91 GAGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTC > 2:2940361/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:268560/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:2662784/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:1531003/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:1673802/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 2:831957/1‑91 AGCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCC > 1:2378532/1‑91 GCATGAACATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCA > 2:506250/1‑91 GCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCA > 2:2548792/1‑91 GCATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCA > 1:1044071/1‑91 CATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCAC > 1:3617345/1‑91 CATGAAAATGCATCTTTTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCAC > 1:2150834/1‑91 CGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATG < 2:251528/91‑1 CGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATG < 2:808482/91‑1 GTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAGATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGT < 2:3465363/91‑1 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATATGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA > 2:1710080/1‑91 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA > 2:2610588/1‑91 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA < 2:2719952/91‑1 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA > 2:2611532/1‑91 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA < 1:908179/91‑1 TAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTA < 1:908178/91‑1 AGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA < 2:3184431/91‑1 AGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA > 2:1746675/1‑91 AGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAA > 2:1746628/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA > 2:2191772/1‑91 GTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAA < 1:3086135/91‑1 TGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAA > 1:3077876/1‑91 GTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAA < 2:1856497/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 1:592101/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 1:493118/91‑1 TCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG < 1:592019/91‑1 GGAAGCTAAAAATATAGAGGGACATGATGTCTTATTGTGGAAACCATAAGATAATAATATTCGACACTACGAGCATGAAAATGCATCTTTTCGTAGTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1183646‑1183547‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAG > USA300TCH1516_ALE/1183585‑1183673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |