BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1183547 =	215 (1.060)	16 (0.090)	6/140	NT	8.0%	intergenic (+58/+51)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase
*	?	USA300TCH1516_ALE	1183585 =	181 (1.020)	16 (0.090)	6/140	NT	8.0%	intergenic (+96/+13)	yfnB/USA300HOU_RS05910	Putative HAD‑hydrolase YfnB/putative N‑acetyltransferase

Only 100 of 266 total aligned reads displayed.

ATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGAA  >  USA300TCH1516_ALE/1183495‑1183675

ataatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCg                                                                                            >  1:999736/1‑91 (MQ=255)

ataatTTGAAAATGATGTACTTATATTAGCTTAAGAAAGTAAAAGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCg                                                                                            <  2:909430/91‑1 (MQ=255)

 taatTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGa                                                                                           >  1:375012/1‑91 (MQ=255)

   atTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAat                                                                                         <  1:3893033/91‑1 (MQ=255)

    tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata                                                                                        >  2:3893233/1‑91 (MQ=255)

    tttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAata                                                                                        <  2:1575722/91‑1 (MQ=255)

     ttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTATTGTCGAatat                                                                                       >  2:897384/1‑91 (MQ=255)

     ttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAatat                                                                                       <  1:3928588/91‑1 (MQ=255)

     ttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAatat                                                                                       >  2:3352013/1‑91 (MQ=255)

     ttGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAatat                                                                                       <  1:1211341/91‑1 (MQ=255)

       gAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtatta                                                                                     >  2:3611179/1‑91 (MQ=255)

           aTGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAAtattattat                                                                                 >  1:9578/1‑91 (MQ=255)

             gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt                                                                               <  2:3100286/91‑1 (MQ=255)

             gATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCt                                                                               >  2:660109/1‑91 (MQ=255)

              aTTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACATTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCtt                                                                              <  2:1013270/91‑1 (MQ=255)

              aTTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAGTATTATTATCtt                                                                              <  1:3054619/91‑1 (MQ=255)

              aTTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCtt                                                                              >  1:101565/1‑91 (MQ=255)

               tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa                                                                             <  2:2679095/91‑1 (MQ=255)

               tttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTa                                                                             <  2:3764300/91‑1 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            >  2:1953588/1‑91 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            >  1:316632/1‑91 (MQ=255)

                ttACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTGTCATGCTCGTAGTGTCGAATATTATTATCTTAt                                                                            >  1:3241763/1‑91 (MQ=255)

                  aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg                                                                          >  2:545414/1‑91 (MQ=255)

                  aCTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATgg                                                                          >  2:545860/1‑91 (MQ=255)

                   cTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGAATATTAATGCTCGTAGTGTCGACTCTTCATATCTCATGGt                                                                         >  2:2580376/1‑91 (MQ=255)

                       tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                                     <  2:2006134/91‑1 (MQ=255)

                       tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                                     <  2:1362958/91‑1 (MQ=255)

                       tatTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTcc                                                                     <  1:2168858/91‑1 (MQ=255)

                         ttAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcac                                                                   <  1:713132/91‑1 (MQ=255)

                         ttAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCcac                                                                   <  1:561461/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  2:1833189/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 >  2:3586177/1‑91 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  1:3184295/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  1:3105294/91‑1 (MQ=255)

                           aGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACaa                                                                 <  2:593245/91‑1 (MQ=255)

                              ttAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATaa                                                              <  1:2078221/91‑1 (MQ=255)

                               tAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAg                                                             <  1:3463846/91‑1 (MQ=255)

                               tAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAg                                                             >  1:1377605/1‑91 (MQ=255)

                               tAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAg                                                             <  1:600077/91‑1 (MQ=255)

                                aaGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGa                                                            >  1:1646783/1‑91 (MQ=255)

                                 aaaaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAc                                                           <  2:1555533/89‑1 (MQ=255)

                                 aGAAAGTAATTGTAAAAAAGACACTACGGAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAc                                                           <  1:2779323/91‑1 (MQ=255)

                                   aaaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcat                                                         <  1:1342069/91‑1 (MQ=255)

                                    aaGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatc                                                        >  1:2352886/1‑91 (MQ=255)

                                     aGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatca                                                       <  2:2930663/91‑1 (MQ=255)

                                      gTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatcat                                                      >  1:2068225/1‑91 (MQ=255)

                                      gTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGAcatcat                                                      <  1:2117981/91‑1 (MQ=255)

                                        aaTTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGt                                                    >  1:1541399/1‑91 (MQ=255)

                                          ttGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTcc                                                  >  2:2403437/1‑91 (MQ=255)

                                          ttGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTcc                                                  >  2:2810057/1‑91 (MQ=255)

                                           tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTccc                                                 >  1:1290760/1‑91 (MQ=255)

                                           tGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGCTTTCCACAATAAGACATCATGTccc                                                 >  1:3676362/1‑91 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                >  1:2211165/1‑91 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                >  1:269915/1‑91 (MQ=255)

                                            gTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCct                                                >  2:1516843/1‑91 (MQ=255)

                                             tAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctc                                               >  2:2356164/1‑91 (MQ=255)

                                              aaaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCctct                                              <  1:3464883/91‑1 (MQ=255)

                                               aaaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCta                                             <  1:2394792/91‑1 (MQ=255)

                                                aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat                                            >  1:2847469/1‑91 (MQ=255)

                                                aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat                                            >  1:1924326/1‑91 (MQ=255)

                                                aaaaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCtat                                            >  2:3148193/1‑91 (MQ=255)

                                                  aaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTatat                                          >  2:1463410/1‑91 (MQ=255)

                                                  aaGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTatat                                          <  2:2941404/91‑1 (MQ=255)

                                                   aGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtt                                         <  1:1704441/91‑1 (MQ=255)

                                                    GACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGCCATCATGTCCCTCTATAttt                                        <  2:939536‑M1/91‑1 (MQ=255)

                                                     ACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAtttt                                       <  1:3346357‑M1/91‑1 (MQ=255)

                                                      CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt                                      <  2:2199143‑M1/91‑1 (MQ=255)

                                                      CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt                                      <  1:2168155‑M1/91‑1 (MQ=255)

                                                      CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt                                      <  1:2595884‑M1/91‑1 (MQ=255)

                                                      CACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATAttttt                                      <  1:466241‑M1/91‑1 (MQ=255)

                                                         TACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGc                                   >  2:734807‑M1/1‑91 (MQ=255)

                                                          ACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCt                                  >  1:2367184‑M1/1‑91 (MQ=255)

                                                          ACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCt                                  >  2:2867110‑M1/1‑91 (MQ=255)

                                                            gagcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTc                                >  1:3220258‑M2/31‑91 (MQ=255)

                                                             agcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTcc                               >  2:1673802‑M2/30‑91 (MQ=255)

                                                              gcatgaaaatgcatcttttcgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCca                              >  1:1044071‑M2/29‑91 (MQ=255)

                                                               aaGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCcac                             <  1:2474241/91‑1 (MQ=255)

                                                                 gATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACAt                           <  1:3256563/91‑1 (MQ=255)

                                                                  aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGGTTCCACATc                          <  2:439884/91‑1 (MQ=255)

                                                                  aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc                          >  2:616334/1‑91 (MQ=255)

                                                                  aTGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATc                          <  2:3839808/91‑1 (MQ=255)

                                                                    gCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTg                        <  2:1144314/91‑1 (MQ=255)

                                                                     cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt                       >  2:2308052/1‑91 (MQ=255)

                                                                     cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt                       >  2:809674/1‑91 (MQ=255)

                                                                     cATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGt                       >  2:3169279/1‑91 (MQ=255)

                                                                         ttCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAAt                   >  1:363509/1‑91 (MQ=255)

                                                                         ttCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAAt                   <  2:2628592/91‑1 (MQ=255)

                                                                          tCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATc                  >  1:1732509/1‑91 (MQ=255)

                                                                           cATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATcc                 <  1:2958180/91‑1 (MQ=255)

                                                                              gCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatg              <  2:1053941/91‑1 (MQ=255)

                                                                              gCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatg              <  1:2270942/91‑1 (MQ=255)

                                                                               cTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatga             >  1:47092/1‑91 (MQ=255)

                                                                               cTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCAATATTTTTAGCTTCCACATCTGTAAATCCatga             >  1:3514381/1‑91 (MQ=255)

                                                                                 cgtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCatgatg           <  2:251528‑M2/82‑1 (MQ=255)

                                                                                  gtagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGAGATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGt          <  2:3465363‑M2/83‑1 (MQ=255)

                                                                                   tagtgtcGAATATTATTATCTTATGGTTTCCACAATATGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTa         >  2:1710080‑M2/8‑91 (MQ=255)

                                                                                   tagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTa         >  2:2610588‑M2/8‑91 (MQ=255)

                                                                                   tagtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTa         <  1:908178‑M2/84‑1 (MQ=255)

                                                                                    agtgtcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTaa        >  2:1746675‑M2/7‑91 (MQ=255)

                                                                                        tcGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAg    <  1:493118‑M2/89‑1 (MQ=255)

ATAATTTGAAAATGATTTACTTATATTAGCTTAAGAAAGTAATTGTAAAAAAGACACTACGAAAAGATGCATTTTCATGCTCGTAGTGTCGAATATTATTATCTTATGGTTTCCACAATAAGACATCATGTCCCTCTATATTTTTAGCTTCCACATCTGTAAATCCATGATGTAAAAAGAA  >  USA300TCH1516_ALE/1183495‑1183675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.