| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1239557 | 163 (0.800) | 24 (0.150) | 18/124 | NT | 13.8% | intergenic (+24/‑166) | USA300HOU_RS06160/recG | hypothetical protein/ATP‑dependent DNA helicase RecG |
| ? | USA300TCH1516_ALE | = 1239571 | 175 (1.110) | intergenic (+38/‑152) | USA300HOU_RS06160/recG | hypothetical protein/ATP‑dependent DNA helicase RecG | |||||
Only 100 of 134 total aligned reads displayed.
ATCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1239450‑1239557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaataaaaaactaccaaCTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < USA300TCH1516_ALE/1239571‑1239482 ATCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTA > 1:1473274/1‑91 TCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAA < 1:2364992/91‑1 TCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAA < 1:193981/91‑1 TCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAA < 1:193957/91‑1 TCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGAGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAA < 2:1904638/91‑1 TCGAAGAGCAATATCCAGATGTAGAAGTGAAAGATCAAGAGGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAA < 2:666099/91‑1 CGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAA > 1:2903523/1‑91 CGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAA < 1:1999557/91‑1 CGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAA < 1:1999154/91‑1 CGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAA > 1:1394048/1‑91 CGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAA > 1:1394029/1‑91 AAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAAT < 1:2323792/91‑1 AAGAGCAATAACCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAAATTAAAAT < 2:3394882/91‑1 AGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATA < 2:2794388/91‑1 AGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATA > 1:1854336/1‑91 AGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATA < 1:732971/91‑1 AGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATA < 2:2020072/91‑1 CAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAA < 1:3165254/91‑1 CAATATCCAGATGTAGAAGTGGAAGTTCACGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAA < 1:3165444/91‑1 AATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAA > 1:298087/1‑91 ATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAAC > 1:981752/1‑91 ATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAAC < 2:491363/91‑1 ATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAAC < 2:491315/91‑1 ATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTA > 1:2235301/1‑91 ATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTA > 2:1145750/1‑91 TCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTAC > 1:323189/1‑91 CCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACC > 1:2550038/1‑91 CAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCA > 1:1145009/1‑91 CAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCA < 2:627776/91‑1 AGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA > 1:2733843/1‑91 AAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA < 1:3664459/91‑1 AGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑T < 2:3250400/91‑1 GTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TT < 2:1358466/91‑1 TTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTG < 1:2195346/91‑1 TTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTG < 2:1583230/91‑1 TTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTG < 2:1006891/91‑1 TCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGG < 1:2688347/91‑1 TCATGAAGGTGAACAATAAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGG < 2:3172017/91‑1 caaGAAGGTGGACAACCAATTTATCAATATTTGTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGT < 2:2437845/88‑1 CATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGT < 2:2639946/91‑1 CATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGT < 2:2740299/91‑1 CATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGT < 1:1243105/91‑1 ATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTA < 2:3929836/91‑1 ATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTA < 1:3862696/91‑1 ATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTA < 1:3868171/91‑1 ATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTA < 2:3896347/91‑1 ATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTA < 2:2320140/91‑1 TGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAG < 2:2416694/91‑1 GAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGT < 1:2960890/91‑1 ataGACAACAAAATTATCACTCTTCCTGTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTT < 2:1233327/88‑1 AAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAA > 2:734048/1‑91 TTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGG > 2:1554772/1‑91 aAAAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTGAAATTTTAATACAAAAGAAAAGAAATATTGATAAATTGGT < 2:3667287/90‑1 AAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTT > 1:361822/1‑91 AAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTT > 1:62780/1‑91 AAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTT > 1:3041646/1‑91 AAATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATGTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTG < 1:2877979/91‑1 AAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTG > 2:2848308/1‑91 AATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGT > 1:3479510/1‑91 AATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGT > 1:466973/1‑91 ATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTC < 1:1628735/91‑1 ATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTC > 1:3313594/1‑91 ATAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTC > 1:3311858/1‑91 TAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCC < 2:569841/91‑1 TAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCC < 2:569867/91‑1 TAAAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCC < 2:2511811/91‑1 TAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCC > 1:38407/1‑91 TAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATGTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCC > 1:2189000/1‑91 AAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCAC > 1:3583927/1‑91 AAAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCAC > 1:2134271/1‑91 AAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACC < 2:2691528/91‑1 AAAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACC < 2:2691544/91‑1 AAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCT > 2:2494615/1‑91 AAACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCT > 2:528247/1‑91 ACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTC < 1:2936483/91‑1 ACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTC > 1:2260764/1‑91 ACTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTC > 2:1183874/1‑91 CTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCA > 2:177278/1‑91 CTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCA > 1:1482975/1‑91 CTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCA > 1:1483067/1‑91 CTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCA < 2:1489175/91‑1 TACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCAT < 1:2728373/91‑1 TACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCAT < 1:2728746/91‑1 TACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCAT < 2:2405042/91‑1 TACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTGCAT > 1:3065735/1‑91 TACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTACAT > 1:3065688/1‑91 ACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATG > 1:2472418/1‑91 ACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATG < 2:233258/91‑1 CCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTGCACCTTCATGA > 1:3580108/1‑91 CCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGA > 2:3261227/1‑91 CAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAA > 1:3537937/1‑91 AACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAAC > 2:2991373/1‑91 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGCAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT > 2:1208366/1‑91 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:1088632/91‑1 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:1209204/91‑1 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:1208982/91‑1 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:1209240/91‑1 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT > 2:2794380/1‑91 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:2853120/91‑1 ACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < 1:382672/91‑1 ATCGAAGAGCAATATCCAGATGTAGAAGTGGAAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1239450‑1239557‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaataaaaaactaccaaCTGATGATTTATCA‑TTGGTAGTTTTTTATTTTAAATTTTTATTCTACTGAAAAGAAATATTGATAAATTGGTTGTCCACCTTCATGAACT < USA300TCH1516_ALE/1239571‑1239482 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |