BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1239557	163 (0.800)	24 (0.150)	18/124	NT	13.8%	intergenic (+24/‑166)	USA300HOU_RS06160/recG	hypothetical protein/ATP‑dependent DNA helicase RecG
*	?	USA300TCH1516_ALE	= 1239571	175 (1.110)	24 (0.150)	18/124	NT	13.8%	intergenic (+38/‑152)	USA300HOU_RS06160/recG	hypothetical protein/ATP‑dependent DNA helicase RecG

Only 100 of 294 total aligned reads displayed.

AAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACTTAGTCA  >  USA300TCH1516_ALE/1239481‑1239661

aaGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAg                                                                                            <  2:491247/91‑1 (MQ=255)

 aGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGt                                                                                           <  1:1088632‑M2/91‑2 (MQ=255)

 aGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGt                                                                                           >  2:2794380‑M2/1‑90 (MQ=255)

 aGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGt                                                                                           <  1:1209240‑M2/91‑2 (MQ=255)

 aGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGt                                                                                           <  1:1208982‑M2/91‑2 (MQ=255)

 aGTGCATGAAGGTGGACAACCAATTTATAAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGt                                                                                           >  2:1213013‑M2/1‑90 (MQ=255)

    tCATGAAGGTGCACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttgg                                                                                        >  1:3580108‑M2/1‑87 (MQ=255)

     cATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggt                                                                                       <  2:233258‑M2/91‑6 (MQ=255)

      aTGCAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggta                                                                                      >  1:3065735‑M2/1‑85 (MQ=255)

      aTGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggta                                                                                      <  1:2728214‑M2/91‑7 (MQ=255)

       tGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtag                                                                                     >  1:1482975‑M2/1‑84 (MQ=255)

       tGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtag                                                                                     <  2:1489175‑M2/91‑8 (MQ=255)

       tGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtag                                                                                     >  2:177278‑M2/1‑84 (MQ=255)

        gAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtagt                                                                                    <  1:3518050‑M2/91‑9 (MQ=255)

            gTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCAtggtagttttt                                                                                  >  2:756881‑M2/1‑80 (MQ=255)

              ggACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCAtggtagtttttta                                                                                >  1:38407‑M2/1‑78 (MQ=255)

              ggACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtagtttttta                                                                              <  2:569867‑M2/91‑15 (MQ=255)

               gACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtagttttttat                                                                             >  1:3311858‑M2/1‑76 (MQ=255)

                aCAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtagttttttatt                                                                            <  1:3862724‑M2/91‑17 (MQ=255)

                 cAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAACATAAAAAACTACCAA‑TGATAAATCATCAGttggtagttttttattt                                                                           <  1:2877979‑M2/91‑18 (MQ=255)

                  aaCCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCAtggtagttttttatttt                                                                            >  1:361822‑M2/1‑74 (MQ=255)

                   aCCAATTTATCAATATTTCTTTTCTTTTGTATTAAAATTTCAAATAAAAAACTACCAA‑TGATAAATCATCAGttggtagttttttattttt                                                                         <  2:3667287‑M2/91‑20 (MQ=255)

                    ccAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAACTGATGATTTATCAtggtagttttttattttaa                                                                          >  2:1554772‑M2/1‑72 (MQ=255)

                    ccAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGc                                                                        <  1:1022363/91‑1 (MQ=255)

                     cAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCt                                                                       <  2:238353/91‑1 (MQ=255)

                       aTTTATCAATATTTCTTTTCAGTAGAATAGAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTAt                                                                     <  2:2314822/91‑1 (MQ=255)

                       aTTTATCAATATTTCTATTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTAt                                                                     <  2:3535243/91‑1 (MQ=255)

                           aTCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTa                                                                 >  2:1279924/1‑91 (MQ=255)

                           aTCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTa                                                                 >  1:88359/1‑91 (MQ=255)

                           aTCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTa                                                                 >  2:257431/1‑91 (MQ=255)

                             cAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGt                                                               >  1:2080108/1‑91 (MQ=255)

                             cAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGt                                                               >  2:371824/1‑91 (MQ=255)

                              aaTATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTg                                                              >  1:2572053/1‑91 (MQ=255)

                              aaTATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTg                                                              >  2:2824505/1‑91 (MQ=255)

                                tatTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGat                                                            <  1:2327404/91‑1 (MQ=255)

                                tatTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGat                                                            >  2:533389/1‑91 (MQ=255)

                                 atTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGata                                                           >  2:1832234/1‑91 (MQ=255)

                                 atTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGata                                                           >  1:2051423/1‑91 (MQ=255)

                                   ttCTTTTCAGTAGAATAAAAATTTAAAATAAAATACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATAtt                                                         <  2:1116206/91‑1 (MQ=255)

                                    tCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTg                                                        >  2:2100493/1‑91 (MQ=255)

                                      ttttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCg                                                      <  1:1295647/91‑1 (MQ=255)

                                       tttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCgg                                                     >  1:2302328/1‑91 (MQ=255)

                                       tttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCgg                                                     <  1:2756435/91‑1 (MQ=255)

                                        ttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCggg                                                    >  2:2703771/1‑91 (MQ=255)

                                        ttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCggg                                                    >  1:1189084/1‑91 (MQ=255)

                                        ttCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCggg                                                    <  1:1586815/91‑1 (MQ=255)

                                          cAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTCTTTTGCTCTTTTAGTGATATTGCGGGtt                                                  >  2:1008902/1‑91 (MQ=255)

                                             tAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTaaa                                               <  1:2648479/91‑1 (MQ=255)

                                                  tAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTAt                                          <  2:1147432/91‑1 (MQ=255)

                                                  tAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTAt                                          >  1:764492/1‑91 (MQ=255)

                                                   aaaaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATc                                         <  1:976612/91‑1 (MQ=255)

                                                   aaaaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATc                                         <  1:2191233/91‑1 (MQ=255)

                                                   aaaaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGGGATATTGCGGGTTAAAAGTATc                                         <  2:2941873/91‑1 (MQ=255)

                                                    aaaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCg                                        <  1:928284/91‑1 (MQ=255)

                                                    aaaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCg                                        <  2:710084/91‑1 (MQ=255)

                                                     aaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGt                                       <  2:2512050/91‑1 (MQ=255)

                                                     aaaTTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGt                                       >  1:3597724/1‑91 (MQ=255)

                                                        tttAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTtct                                    <  2:3279663/91‑1 (MQ=255)

                                                        tttAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTtct                                    >  2:3210453/1‑91 (MQ=255)

                                                             aataaaaAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCTGGTTAAAAGTATCGTTCTAGAGt                               >  1:498566/1‑91 (MQ=255)

                                                             aataaaaAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGt                               >  1:379959/1‑91 (MQ=255)

                                                             aataaaaAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGt                               >  2:3472453/1‑91 (MQ=255)

                                                               taaaaAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTg                             <  1:1713131/91‑1 (MQ=255)

                                                                  aaaaCTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTa                          <  1:588053/91‑1 (MQ=255)

                                                                  aaaaCTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTGCTCGAGTTGCTa                          <  1:3054509/91‑1 (MQ=255)

                                                                   aaaCTACCAACTGATGATTTATCA‑TTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTaa                         >  2:1196776/1‑91 (MQ=18)

                                                                    aaCTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAAc                        <  1:2264641/91‑1 (MQ=255)

                                                                    aaCTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAAc                        <  1:2456780/91‑1 (MQ=255)

                                                                     aCTACCAA‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaagaaatattgataaattggttgtccaccttc                       <  1:2960890‑M2/91‑70 (MQ=255)

                                                                     aCTACCAA‑TGATAAATCATCAGTTGGTAGTTTGTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACa                       <  2:1611507/91‑1 (MQ=255)

                                                                      cTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGCGTTGCTAACaa                      >  1:3583658/1‑91 (MQ=255)

                                                                        aCCAA‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaagaaatattgataaattggttgtccaccttcatg                    <  2:2740299‑M2/91‑73 (MQ=255)

                                                                        aCCAA‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaagaaatattgataaattggttgtccaccttcatg                    <  2:2639946‑M2/91‑73 (MQ=255)

                                                                        aCCAA‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaacaaatattgataaattggttgtccaccttcttg                    <  2:2437845‑M2/91‑73 (MQ=255)

                                                                        aCCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATg                    >  1:3469444/1‑91 (MQ=255)

                                                                         ccAA‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaagaaatattgataaatttattgttcaccttcatga                   <  2:3172017‑M2/91‑74 (MQ=255)

                                                                          cAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTc                  <  2:2920551/91‑1 (MQ=255)

                                                                           aa‑TGATAAATCATCAGttggtagttttttattttaaatttttattctactgaaaagaaatattgataaattggttgtccaccttcatgaac                 <  2:1358466‑M2/91‑76 (MQ=255)

                                                                           aa‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCa                 >  1:693142/1‑91 (MQ=255)

                                                                           aa‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCa                 >  1:1955363/1‑91 (MQ=255)

                                                                            a‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCAt                <  1:397462/91‑1 (MQ=255)

                                                                              tGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATg               <  1:2808272/91‑1 (MQ=255)

                                                                               gATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGt              <  2:860592/91‑1 (MQ=255)

                                                                               gATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGt              <  2:2166287/91‑1 (MQ=255)

                                                                                 tAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTc            >  1:1378436/1‑91 (MQ=255)

                                                                                  aaaTCATCAGTTGGTAGTTTTTTTTTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTCACAATGTCATGTTcc           >  2:3956416/1‑90 (MQ=255)

                                                                                   aaTCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACATTGTCATGTTCaa          <  1:3055729/91‑1 (MQ=255)

                                                                                   aaTCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCaa          <  2:3238908/91‑1 (MQ=255)

                                                                                   aaTCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCaa          <  2:2000650/91‑1 (MQ=255)

                                                                                    atcatcAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAAc         >  1:997052/1‑91 (MQ=255)

                                                                                     tcatcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACt        >  2:2503543/1‑91 (MQ=255)

                                                                                     tcatcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACt        <  1:2222411/91‑1 (MQ=255)

                                                                                     tcatcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACt        <  1:2383086/91‑1 (MQ=255)

                                                                                      catcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACtt       <  2:3880113/91‑1 (MQ=255)

                                                                                      catcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACtt       >  1:2737829/1‑91 (MQ=255)

                                                                                        tcaGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACTTAg     >  2:3839385/1‑91 (MQ=255)

                                                                                           gTTGGTAGTTTTTTATTTTGCTTTTTTAGTGATATTGCGGGTTAAAAGTATCGTTTTCGAGTTGCTAACAATGTCATGTTCAACTTAGTCa  >  2:1889083/1‑91 (MQ=255)

                                                                                           gTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCATCTTAGTCa  >  2:3755139/1‑91 (MQ=255)

                                                                                           gTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACTTAGTCa  <  1:3352630/91‑1 (MQ=255)

                                                                                           gTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACTTAGTCa  <  1:3650964/91‑1 (MQ=255)

AAGTTCATGAAGGTGGACAACCAATTTATCAATATTTCTTTTCAGTAGAATAAAAATTTAAAATAAAAAACTACCAA‑TGATAAATCATCAGTTGGTAGTTTTTTATTTTGCTATTTTAGTGATATTGCGGGTTAAAAGTATCGTTCTCGAGTTGCTAACAATGTCATGTTCAACTTAGTCA  >  USA300TCH1516_ALE/1239481‑1239661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.