| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1245227 = | 205 (1.010) | 14 (0.080) | 9/146 | NT | 7.3% | intergenic (+32/‑211) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG/Acyl carrier protein |
| ? | USA300TCH1516_ALE | 1245269 = | 169 (0.910) | intergenic (+74/‑169) | fabG/acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase FabG/Acyl carrier protein | |||||
TCTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1245323‑1245227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcaacTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAAA > USA300TCH1516_ALE/1245269‑1245358 TCTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑A > 1:3493127/1‑91TCTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑A > 1:1148399/1‑91TCTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑A > 2:3270338/1‑91 CTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AG < 2:335864/91‑1 TTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGT < 2:2737184/91‑1 TTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGT > 2:1607693/1‑91 TAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTC < 1:954105/91‑1 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCCTTGGATGACC‑AGTCA > 1:1305961/1‑91 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCA > 1:1659565/1‑91 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCA > 1:857690/1‑91 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCA < 1:470429/91‑1 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCACTGGATGACC‑AGTCA > 2:97786/1‑91 AGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTGGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCA > 1:3653322/1‑91 AGGGAGAAATTCTGGAACCTTATCTAGGTCGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCA > 2:250680/1‑91 GGGAGAAATTCTGGAAGCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAA < 2:3773077/91‑1 GGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAA < 2:1513958/91‑1 GGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAA < 1:3012280/91‑1 GGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAA < 1:3478165/91‑1 GGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAAC < 1:36787/91‑1 GGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAAC > 1:2993638/1‑91 GGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTGCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAAC < 1:37003/91‑1 TGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCT > 1:95115/1‑91 TGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCT > 1:94948/1‑91 ACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAA > 1:3633508/1‑91 TAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGA > 1:570773/1‑91 GGTCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAA > 2:1508677/1‑91 TCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACA > 1:3323375/1‑91 TCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACA > 1:70675/1‑91 TCAGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACA > 1:70694/1‑91 AGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACT > 1:1036114/1‑91 AGACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACT > 2:2787008/1‑91 GACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTA > 1:1399342/1‑91 GACAATTCTCCATTGGATGACC‑AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTA > 1:1348716/1‑91 CAATTCTCCATTGGATGACCTAGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAA > 2:526133/1‑91 TCTCCATTGGATGACCTAGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAA > 1:213652/1‑91 AGTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTT < 2:1399215/91‑1 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTcc > 2:571854/1‑89 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 2:617837/1‑91 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 2:263349/1‑91 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 1:2970039/1‑91 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC < 2:1148622/91‑1 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 1:2970382/1‑91 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 1:1033630/1‑91 GTCAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTC > 1:568664/1‑91 CAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTA > 1:269434/1‑91 CAACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTA < 2:2912267/91‑1 CAACTTTGCGGGAGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATCTCTCCCTAAGAAACACTAATCAATAAATTGATCAGTGTTTCTA > 2:829124/1‑91 AACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTta < 1:368223/91‑3 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAA > 1:1574300/1‑91 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAA > 1:2872176/1‑91 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAA > 1:2872457/1‑91 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAA > 1:359513/1‑91 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTCCTAAA > 2:3209539/1‑91 ACTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGAGTTTCTAAA > 1:2872264/1‑91 CTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAAA < 2:277481/91‑1 TCTTAGGGAGAAATTCTGGAACCTTATCTAGGTTGCTTAGAATTTCCCCCGCAAAGTTGACTAGGTCAGACAATTCTCCATTGGATGACC‑AGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1245323‑1245227‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtcaacTTTGCGGGGGAAATTCTAAGCAACCTAGATAAGGTTCCAGAATTTCTCCCTAAGAAACACTAATCAATAAATTGATAAGTGTTTCTAAAA > USA300TCH1516_ALE/1245269‑1245358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |