| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1253236 | 155 (0.760) | 10 (0.050) | 6/152 | NT | 6.0% | intergenic (+43/‑392) | ffh/rpsP | Signal recognition particle protein/30S ribosomal protein S16 |
| ? | USA300TCH1516_ALE | = 1253273 | 168 (0.870) | intergenic (+80/‑355) | ffh/rpsP | Signal recognition particle protein/30S ribosomal protein S16 | |||||
AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1253143‑1253236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaCCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT < USA300TCH1516_ALE/1253273‑1253184 AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGT > 2:1951645/1‑91AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGT > 2:1951506/1‑91AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGT > 1:1721199/1‑91AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGT > 1:2849843/1‑91AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGT > 2:1360837/1‑91 AACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCATTTATATGTG > 2:414169/1‑91 AACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTG > 2:2441459/1‑91 AACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTG < 2:1890819/91‑1 AACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTG < 1:907371/91‑1 ACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGC < 2:3466171/91‑1 ACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGC > 1:322957/1‑91 TGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTT < 1:2430779/91‑1 AATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAATGTTATATTCTTTAGTATAACTTTC < 1:1185399/91‑1 AATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTC < 2:3253555/91‑1 ATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCG < 1:631734/91‑1 ATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCG < 1:1392460/91‑1 TTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGG < 2:1199692/91‑1 TTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGG < 2:1276971/91‑1 TTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGG < 1:1567711/91‑1 ACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGAT < 1:1171949/91‑1 ACACGCTGATTTTTGTTGCAATGAGATGTGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAA < 1:3346750/91‑1 TGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAAC > 1:3757069/1‑91 TGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAAC < 1:1245113/91‑1 TGCACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAAC < 2:3495067/91‑1 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAGAAATCAGCGTGTTATATTAAACATTAAAACGG > 2:1754818/1‑91 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG > 2:1754829/1‑91 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG < 1:2694111/91‑1 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG > 1:429690/1‑91 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG > 1:121848/1‑91 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG > 2:3733827/1‑91 CACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCACATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGG < 2:3127528/91‑1 ACCCCATAAAGTTATGTTCTTTAGTGTAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT < 2:3422168/91‑1 ACCCCATAAAGTTATGTTCTTTAGTGTAACTTTCGGGATGCACATCTCATTACAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT < 2:3422405/91‑1 ACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT < 2:1627368/91‑1 ACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT > 2:2778028/1‑91 ACCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT > 1:388731/1‑91 AAACGCAATCAAATGCAAAATATGTTAAAAGGTATGAATTTACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1253143‑1253236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaCCCCATAAAGTTATATTCTTTAGTATAACTTTCGGGATGCACATCTCATTGCAACAAAAATCAGCGTGTTATATTAAACATTAAAACGGT < USA300TCH1516_ALE/1253273‑1253184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |