BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1253236	155 (0.760)	10 (0.050)	6/152	NT	6.0%	intergenic (+43/‑392)	ffh/rpsP	Signal recognition particle protein/30S ribosomal protein S16
*	?	USA300TCH1516_ALE	= 1253273	168 (0.870)	10 (0.050)	6/152	NT	6.0%	intergenic (+80/‑355)	ffh/rpsP	Signal recognition particle protein/30S ribosomal protein S16

Only 100 of 212 total aligned reads displayed.

TACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAGTTA  >  USA300TCH1516_ALE/1253183‑1253363

tACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATgggg                                                                                            <  2:3628907/91‑1 (MQ=255)

 aCCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGt                                                                                           <  2:1627368‑M2/91‑2 (MQ=255)

 aCCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGt                                                                                           >  2:2778028‑M2/1‑90 (MQ=255)

  ccGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGtg                                                                                          <  1:2694111‑M2/91‑3 (MQ=255)

  ccGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGtg                                                                                          >  1:121848‑M2/1‑89 (MQ=255)

  ccGTTTTAATGTTTAATATAACACGCTGATTTCTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGtg                                                                                          >  2:1754818‑M2/1‑89 (MQ=255)

    gTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGtgca                                                                                        >  1:3757069‑M2/1‑87 (MQ=255)

     ttttAATGTTTAATATAACACGCTGATTTTTGTTTTAATGACATGTGCATCCCGAAAGTTATACTAAAGAATATAACTGTATGGGGTGCat                                                                                       >  2:2199655/1‑91 (MQ=255)

       ttAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCatat                                                                                     <  1:1921943/91‑1 (MQ=255)

       ttAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCatat                                                                                     >  1:2581143/1‑91 (MQ=255)

         aaTGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATAttt                                                                                   >  1:379100/1‑91 (MQ=255)

          aTGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATAtttt                                                                                  <  1:3594452/91‑1 (MQ=255)

          aTGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATAtttt                                                                                  <  2:2682186/91‑1 (MQ=255)

            gTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTa                                                                                <  1:2624675/91‑1 (MQ=255)

              ttAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGa                                                                              <  1:2909722/91‑1 (MQ=255)

                    taACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATAcaca                                                                        >  2:1794724/1‑91 (MQ=255)

                    taACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATAcaca                                                                        >  1:1812245/1‑91 (MQ=255)

                      acacGCTGATTTTTTTTTTATTTATATGTGCATCCCGACCGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaat                                                                      >  2:3524024/1‑91 (MQ=255)

                      acacGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaat                                                                      >  2:2768014/1‑91 (MQ=255)

                      acacGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaat                                                                      >  2:561479/1‑91 (MQ=255)

                      acacGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaat                                                                      >  1:625888/1‑91 (MQ=255)

                      acacGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaat                                                                      <  2:2040268/91‑1 (MQ=255)

                        acGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaataa                                                                    <  2:3744745/91‑1 (MQ=255)

                           cTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaataataa                                                                 >  1:2521454/1‑91 (MQ=255)

                           cTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaataataa                                                                 <  1:2968265/91‑1 (MQ=255)

                            tGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaataataat                                                                >  2:2364214/1‑91 (MQ=255)

                            tGATATTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACaataataat                                                                >  2:3152478/1‑91 (MQ=255)

                             gATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAAtt                                                               >  1:2352897/1‑91 (MQ=255)

                               tttttGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTaa                                                             >  1:2998544/1‑91 (MQ=255)

                                ttttGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTaaa                                                            <  2:470288/91‑1 (MQ=255)

                                  ttgttgCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTaaaaa                                                          >  1:105036/1‑91 (MQ=255)

                                  ttgttgCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTaaaaa                                                          <  2:342240/91‑1 (MQ=255)

                                   tgttgCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAAc                                                         >  1:3543527/1‑91 (MQ=255)

                                   tgttgCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAAc                                                         <  1:1744713/91‑1 (MQ=255)

                                      tgCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGa                                                      <  1:3711752/91‑1 (MQ=255)

                                         aaTGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAAt                                                   <  1:3448779/91‑1 (MQ=255)

                                         aaTGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAAt                                                   >  1:1978723/1‑91 (MQ=255)

                                           tGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTTAAATTg                                                 <  1:3076814/91‑1 (MQ=255)

                                           tGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTg                                                 <  2:1326846/91‑1 (MQ=255)

                                           tGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTg                                                 <  2:707834/91‑1 (MQ=255)

                                              gaTGTGCATCCCGACAGTTATACTAAAGAATATAACTTTATGGGGTGCCTATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTg                                              >  2:1150134/1‑91 (MQ=255)

                                               aTGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGa                                             <  2:3246214/91‑1 (MQ=255)

                                                tgtgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAt                                            >  2:2834547/1‑91 (MQ=255)

                                                tgtgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAt                                            >  1:3204729/1‑91 (MQ=255)

                                                 gtgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAtt                                           >  2:60923/1‑91 (MQ=255)

                                                 gtgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAtt                                           <  1:3005895/91‑1 (MQ=255)

                                                  tgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAttt                                          >  1:3786728/1‑91 (MQ=255)

                                                  tgCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGAttt                                          >  2:871639/1‑91 (MQ=255)

                                                   gCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTg                                         <  2:349001/91‑1 (MQ=255)

                                                   gCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTg                                         <  1:144915/91‑1 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggt                                       <  1:1171949‑M2/91‑54 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCt                                       >  2:3568372/1‑91 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCt                                       <  2:3038878/91‑1 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCt                                       <  2:2539681/91‑1 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCt                                       >  1:474626/1‑91 (MQ=255)

                                                     aTCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCt                                       >  1:804784/1‑91 (MQ=255)

                                                       cccGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAg                                     >  1:2954528/1‑91 (MQ=255)

                                                       cccGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCAGATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAg                                     <  2:3316329/91‑1 (MQ=255)

                                                        ccGAAAGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggtaaa                                    <  2:1199692‑M2/91‑57 (MQ=255)

                                                        ccGAAAGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggtaaa                                    <  2:1276971‑M2/91‑57 (MQ=255)

                                                        ccGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGa                                    >  2:2209703/1‑91 (MQ=255)

                                                         cGAAAGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggtaaat                                   <  1:1392460‑M2/91‑58 (MQ=255)

                                                         cGAAAGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggtaaat                                   <  1:631734‑M2/91‑58 (MQ=255)

                                                         cGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGaa                                   <  1:1581282/91‑1 (MQ=255)

                                                          gAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAAc                                  <  2:2260071/91‑1 (MQ=255)

                                                            aaGTTATACTAAAGAATATAACTTTATGGGGtgcacatctcattgcaacaaaaatcagcgtgttatattaaacattaaaacggtaaattca                                <  1:2430779‑M2/91‑61 (MQ=255)

                                                            aaGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACAt                                >  1:218280/1‑91 (MQ=255)

                                                             aGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATg                               <  1:2092328/91‑1 (MQ=255)

                                                             aGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATg                               >  1:3893513/1‑91 (MQ=255)

                                                             aGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATg                               >  2:3352480/1‑91 (MQ=255)

                                                              gTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGa                              >  2:1467336/1‑91 (MQ=255)

                                                              gTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGa                              >  2:1002251/1‑91 (MQ=255)

                                                               ttATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAg                             <  2:1142077/91‑1 (MQ=255)

                                                                tataCTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATCATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAgg                            >  2:643812/1‑91 (MQ=255)

                                                                tataCTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACCTGAgg                            >  2:3201235/1‑91 (MQ=255)

                                                                 gtaCGAAAGTATATTACGTTATGGGGTGCGTATTTTTAGATACACAATAATAATTGAAAACTGAAATTGCTGATGTGCTAGAACATGAGGt                           <  2:798898/90‑1 (MQ=255)

                                                                 ataCTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGt                           >  2:3146581/1‑91 (MQ=255)

                                                                 ataCTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGt                           >  1:2852039/1‑91 (MQ=255)

                                                                  taCTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGtt                          >  2:3413613/1‑91 (MQ=255)

                                                                       aaGAGTATAGCTTTATGGGGTGCATATTTTTAGAGGCTCAGTAGCGATTAGCAACTGCGTTTGCTGATTTGCTAGAACATGACGTGAttgt                     <  2:2356034/91‑1 (MQ=255)

                                                                       aaGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgt                     <  1:2512136/91‑1 (MQ=255)

                                                                       aaGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgt                     <  2:689775/91‑1 (MQ=255)

                                                                       aaGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgt                     <  2:3861256/91‑1 (MQ=255)

                                                                       aaGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgt                     <  1:2016193/91‑1 (MQ=255)

                                                                        aGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgtt                    <  1:1545554/91‑1 (MQ=255)

                                                                         gAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTAttgttg                   >  2:2436417/1‑91 (MQ=255)

                                                                          aaTATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGc                  <  2:3433523/91‑1 (MQ=255)

                                                                           atatAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCt                 >  1:919655/1‑91 (MQ=255)

                                                                              taACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAat              >  2:2316099/1‑91 (MQ=255)

                                                                              taACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAat              >  1:1518504/1‑91 (MQ=255)

                                                                               aaCTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAata             <  2:3695645/91‑1 (MQ=255)

                                                                               aaCTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAata             >  1:708275/1‑91 (MQ=255)

                                                                                aCTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAatat            <  1:2006948/91‑1 (MQ=255)

                                                                                aCTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAatat            >  1:3296836/1‑91 (MQ=255)

                                                                                aCTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAatat            >  2:1447908/1‑91 (MQ=255)

                                                                                       ggggTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAg     <  1:582317/91‑1 (MQ=255)

                                                                                       ggggTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAg     <  1:3847456/91‑1 (MQ=255)

                                                                                        gggTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAGt    <  1:1695397/91‑1 (MQ=255)

                                                                                        gggTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAGt    <  2:1084248/91‑1 (MQ=255)

                                                                                          gTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAGTta  >  1:881804/1‑91 (MQ=255)

TACCGTTTTAATGTTTAATATAACACGCTGATTTTTGTTGCAATGAGATGTGCATCCCGAAAGTTATACTAAAGAATATAACTTTATGGGGTGCATATTTTTAGATACACAATAATAATTAAAAACTGAAATTGCTGATTTGCTAGAACATGAGGTTATTGTTGCTAATATTAATAAGTTA  >  USA300TCH1516_ALE/1253183‑1253363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.