| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1262900 = | 158 (0.780) | 23 (0.130) | 8/140 | NT | 13.3% | intergenic (+25/‑202) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN |
| ? | USA300TCH1516_ALE | 1262943 = | 162 (0.910) | intergenic (+68/‑159) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN | |||||
ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262999‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA > USA300TCH1516_ALE/1262943‑1263032 ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑A < 1:137771/91‑1ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑A < 1:519753/91‑1ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑A < 2:2754480/91‑1ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑A < 2:2759031/91‑1 TAATTGACTTGTCTTTCCAAAATATTAAAAGTGTACTAAGATTCATCGCACGATAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA < 1:3675388/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA < 2:1255873/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA < 1:140134/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA < 1:139486/91‑1 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA > 1:1047081/1‑91 TAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AA < 1:1675307/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AAT < 1:1824714/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AAT < 1:1825227/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AAT < 1:2040611/91‑1 AATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AAT < 1:488169/91‑1 ATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATG < 1:2820125/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGG < 2:416056/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGG < 1:254934/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGG < 1:254947/91‑1 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGG > 2:1136606/1‑91 TTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGG > 2:941907/1‑91 tatCTTGTCTTTCCAAAATATAAAATGTGTTCTAAAATTCATCGCACGACAATTAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGG < 2:597970/88‑1 TAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGG > 1:2220665/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGC < 1:901191/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGC > 1:779116/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGC > 2:8508/1‑91 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGC < 2:1079915/91‑1 AACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTATTAT‑AAAGTAT‑GG‑AATGGGC > 2:1350152/1‑91 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCT > 1:957264/1‑91 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCT < 1:3604595/91‑1 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCT > 2:2194295/1‑91 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCT > 1:3732551/1‑91 ACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCT > 1:814946/1‑91 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTA < 2:2377314/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTA < 2:2374530/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTA < 1:871466/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTA < 1:1822157/91‑1 CTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTA > 1:1719815/1‑91 TTGTCTTTCGAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTAT < 1:3548247/91‑1 TTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTAT < 1:1794726/91‑1 TTGTCTTTCCAAAATATGAAAAGTGCACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTAT < 1:3685521/91‑1 ATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCAATTTCCAATACTTTTAC‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAA > 2:3441456/1‑91 TGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAG < 2:2052322/91‑1 ATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATT > 1:3506432/1‑91 TTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTA > 1:980210/1‑91 TTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAT > 2:2647102/1‑91 CGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 1:54154/1‑91 CGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 1:753385/1‑91 CGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAAATATTTT > 1:3823281/1‑91 GATACTTTTAT‑AAAGTAT‑GGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTT > 1:1884072/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:2943669/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:3099770/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:3100872/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:3414845/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 2:975799/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:993806/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:830676/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:2065424/1‑91 GATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:235193/1‑91 ATACTTTTAT‑AAAGTAT‑GGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTA > 1:3440576/1‑91 ATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAC > 2:2309304/1‑91 ATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAC > 1:649646/1‑91 ATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAC > 2:254797/1‑91 ATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAC > 2:590533/1‑91 ATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAA < 2:900707/91‑1 ATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAA < 2:2551628/91‑1 TGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAA > 1:1558245/1‑91 TGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAACTTTATAAA > 1:3788919/1‑91 GGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAA > 1:2346071/1‑91 GGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAA < 1:67771/91‑1 GGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAC > 1:2049166/1‑91 CTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAA < 1:3819699/91‑1 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAATACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:3143997/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 2:2755794/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 2:3325379/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:3217801/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:582931/1‑91 TATTTGTCGTGCGATGAATTTTAGTACACTTATCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAA > 1:3273002/1‑91 ATTTGTCGTGCGATGAATTTTAGTACACTTTTCATCTTCTGGAAATACAAGTTAATTATTTTCCCTCCTACCAGAGCTCTCTAAAACAAAG < 2:1119570/91‑1 ATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAG < 1:3750392/91‑1 ATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAG < 2:3200571/91‑1 TTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA < 2:1856327/91‑1 ATAATTAACTTGTCTTTCCAAAATATGAAAAGTGTACTAAAATTCATCGCACGACAAATAGCCCATTTCCGATACTTTTAT‑AAAGTAT‑GG‑AATGGGCTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1262999‑1262900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA > USA300TCH1516_ALE/1262943‑1263032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |