BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1262900 =	158 (0.780)	23 (0.130)	8/140	NT	13.3%	intergenic (+25/‑202)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN
*	?	USA300TCH1516_ALE	1262943 =	162 (0.910)	23 (0.130)	8/140	NT	13.3%	intergenic (+68/‑159)	sucD/lytN_1	Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN

Only 100 of 267 total aligned reads displayed.

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA  >  USA300TCH1516_ALE/1262853‑1263032

 attattAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAttt                                                                                          <  1:1048511/91‑1 (MQ=255)

 attattAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAttt                                                                                          <  1:2640/91‑1 (MQ=255)

 attattAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAttt                                                                                          <  1:788114/91‑1 (MQ=255)

  ttattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTg                                                                                         <  2:1769266/91‑1 (MQ=255)

  ttattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTg                                                                                         >  1:1461465/1‑91 (MQ=255)

   tattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGt                                                                                        >  1:1148527/1‑91 (MQ=255)

    attaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTCTTTGtt                                                                                       >  2:3347770/1‑90 (MQ=255)

    attaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTc                                                                                       >  2:3959522/1‑91 (MQ=255)

    attaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTc                                                                                       >  1:3863008/1‑91 (MQ=255)

     ttaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCg                                                                                      >  2:1345941/1‑91 (MQ=255)

      taACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGt                                                                                     >  2:2246983/1‑91 (MQ=255)

      taACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGt                                                                                     >  1:2550515/1‑91 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAGTGGGCTATTTGTCGTGCGa                                                                                 <  2:3454817/91‑1 (MQ=255)

          tGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGa                                                                                 >  1:2343242/1‑91 (MQ=255)

             taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa                                                                              >  1:297226/1‑91 (MQ=255)

                taaataaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAtt                                                                           >  2:772803/1‑91 (MQ=255)

                  tttaaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAtttt                                                                         >  1:2748985/3‑91 (MQ=255)

                  aataaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAtttt                                                                         <  1:2939843/91‑1 (MQ=255)

                    tgtactaaaattcatcgcacgacaaatagcccatttccgatactttataaaagtatcggaaatgggctatTTGTCGTGCGATGAATTTTAg                                                                       <  2:2052322‑M2/21‑1 (MQ=255)

                     aaaGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGt                                                                      >  2:911397/1‑91 (MQ=255)

                       aGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTac                                                                    >  2:250599/1‑91 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATTCTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca                                                                   >  2:3732221/1‑91 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca                                                                   >  2:1690530/1‑91 (MQ=255)

                        gTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca                                                                   >  1:3526822/1‑91 (MQ=255)

                          tAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACt                                                                 >  2:659173/1‑91 (MQ=255)

                           aaaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtt                                                                >  1:550635/1‑91 (MQ=255)

                            aaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt                                                               <  2:1068847/91‑1 (MQ=255)

                            aaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt                                                               >  2:2668444/1‑91 (MQ=255)

                            aaaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt                                                               >  1:1378718/1‑91 (MQ=255)

                             aaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt                                                              >  1:708181/1‑91 (MQ=255)

                             aaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt                                                              <  1:385379/91‑1 (MQ=255)

                             aaGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt                                                              <  1:3802544/91‑1 (MQ=255)

                              aGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc                                                             >  2:1616213/1‑91 (MQ=255)

                              aGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc                                                             >  2:2323084/1‑91 (MQ=255)

                              aGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc                                                             <  2:244906/91‑1 (MQ=255)

                               gatgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCa                                                            >  1:1040063/1‑91 (MQ=255)

                               gatgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCa                                                            <  1:2177275/91‑1 (MQ=255)

                                ttcatcgcacgacaaATAGCCCATTCCATACTTTGTAAAAGTATTGGAAATTGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCat                                                           >  2:3441456‑M1/16‑91 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                          >  1:363268/1‑91 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                          >  1:3493760/1‑91 (MQ=255)

                                 tgatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                          >  2:419240/1‑91 (MQ=255)

                                 ggatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata                                                          <  2:1107870/90‑1 (MQ=255)

                                  gatATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCatat                                                         >  1:2252569/1‑91 (MQ=255)

                                       aaaTGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTgg                                                    <  2:1407650/91‑1 (MQ=255)

                                        aagggCTATAGGCCATTCCATACGTTATAAAAGTATCGTAAATGGGCTATTTGGCGTGCGATGAATTTTAGTTCACTTTTCATATTTTGGa                                                   <  2:3020577/88‑1 (MQ=255)

                                           ggCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAg                                                <  2:3224484/91‑1 (MQ=255)

                                            gCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGa                                               <  1:3034795/91‑1 (MQ=255)

                                             cTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTCGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGAc                                              >  1:3137428/1‑91 (MQ=255)

                                              tataGCCCATTCCATACTTTATAAAAGTATCGGCAATGGGCTTTTTGTCGTGCGATGAATTTTAGTACACTCTTCTTATTTTGGAAAGACa                                             >  2:3771304/1‑91 (MQ=255)

                                              tataGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACa                                             >  2:3186773/1‑91 (MQ=255)

                                               ATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACaa                                            <  1:1794726‑M1/91‑1 (MQ=255)

                                                TAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAg                                           <  1:871466‑M1/91‑1 (MQ=255)

                                                TAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAg                                           <  2:2374530‑M1/91‑1 (MQ=255)

                                                 AGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt                                          >  1:957264‑M1/1‑91 (MQ=255)

                                                 AGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt                                          >  1:3732551‑M1/1‑91 (MQ=255)

                                                 AGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt                                          >  2:2194295‑M1/1‑91 (MQ=255)

                                                   CCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTAATTGTCGTGCGATGAATTTTAGAACACATTTTATATTTTGGAAAGAcaagata                                        <  2:597970‑M1/91‑4 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                       >  2:1136606‑M1/1‑91 (MQ=255)

                                                    CCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa                                       <  1:254934‑M1/91‑1 (MQ=255)

                                                      ATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                     <  1:1824714‑M1/91‑1 (MQ=255)

                                                      ATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt                                     <  1:488169‑M1/91‑1 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatta                                    <  2:1255873‑M1/91‑1 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatta                                    <  1:140134‑M1/91‑1 (MQ=255)

                                                       TTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTATCGTGCGATGAATCTTAGTACACTTTTAATATTTTGGAAAGACAAGTCAatta                                    <  1:3675388‑M1/91‑1 (MQ=255)

                                                        TCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattat                                   <  2:2759031‑M1/91‑1 (MQ=255)

                                                         ccATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattatt                                  >  2:573012/1‑91 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                 <  2:2297922/91‑1 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                 <  1:383089/91‑1 (MQ=255)

                                                          cATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAttt                                 <  2:1939831/91‑1 (MQ=255)

                                                           aTACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTActtt                                >  1:3561500/1‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                               >  2:2943669‑M2/31‑91 (MQ=255)

                                                            gatacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTa                               >  2:3414845‑M2/31‑91 (MQ=255)

                                                             atacttttataaagtatggaatgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAc                              >  1:649646‑M2/30‑91 (MQ=255)

                                                              cTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTCTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcc                             <  1:1183426/91‑1 (MQ=255)

                                                                ttATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctc                           >  1:2849562/1‑91 (MQ=255)

                                                                ttATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctc                           >  2:884444/1‑91 (MQ=255)

                                                                 tataAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcc                          >  1:733843/1‑91 (MQ=255)

                                                                  ataAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTAcctcct                         <  2:2104967/91‑1 (MQ=255)

                                                                  ataAAAGTATCGGAAATGGGCTACCTGTCGTGCGATGAATTTTAGTACACCTTTTATATTTTGGAAAGACAAGTTAATTATTTGAcctcct                         <  2:3681862/91‑1 (MQ=255)

                                                                   taAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTa                        >  2:3606955/1‑91 (MQ=255)

                                                                   ataaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTa                        >  1:1893939/3‑91 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTGCACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                       <  2:559356/91‑1 (MQ=255)

                                                                    aaaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTAc                       >  1:83259/1‑91 (MQ=255)

                                                                     aaaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGCCAAGTTAATTATTTTACCTCCTACa                      >  2:3424634/1‑91 (MQ=255)

                                                                     aaaGTATCGGAAATGGGCTATTTGTCGTGCGATCAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACa                      <  2:503689/91‑1 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                     <  1:2712165/91‑1 (MQ=255)

                                                                      aaGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACaa                     <  1:1071306/91‑1 (MQ=255)

                                                                        gTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATa                   >  1:2357180/1‑91 (MQ=255)

                                                                         tATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAg                  <  2:1482205/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                 <  1:3305856/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                 <  1:3819601/91‑1 (MQ=255)

                                                                          aTCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGc                 <  1:680263/91‑1 (MQ=255)

                                                                            cGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCtt               <  2:439549/91‑1 (MQ=255)

                                                                            cGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCtt               >  1:1709890/1‑91 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt              <  1:1270720/91‑1 (MQ=255)

                                                                             ggAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCttt              <  2:2902858/91‑1 (MQ=255)

                                                                                 atgggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATaa          <  2:2551628‑M2/82‑1 (MQ=255)

                                                                                    ggctatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAAc       >  1:2049166‑M2/7‑91 (MQ=255)

                                                                                       tatTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACaaa    >  1:3217801‑M2/4‑91 (MQ=255)

                                                                                         tTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGa  <  2:1856327‑M2/90‑1 (MQ=255)

CATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTCCATACTTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTATTTTACCTCCTACAATAGCTTTATAAAACAAAGA  >  USA300TCH1516_ALE/1262853‑1263032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.