New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1265511227 (1.110)11 (0.070) 7/130 NT 5.4% intergenic (+19/‑154) femA_1/dprA Aminoacyltransferase FemA/DNA processing protein DprA
?USA300TCH1516_ALE = 1265527 198 (1.200)intergenic (+35/‑138) femA_1/dprA Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 110 total aligned reads displayed.

CACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1265407‑1265511
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagtatgttggaaaGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTTTG  <  USA300TCH1516_ALE/1265527‑1265438
                                                                                                                                                                                                   
CACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATA                                                                                                          <  2:2264796/91‑1
CACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATA                                                                                                          >  2:2041027/1‑91
 ACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAA                                                                                                         >  2:1235594/1‑91
  CATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAA                                                                                                        >  1:748681/1‑91
  CATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAA                                                                                                        <  1:2269168/91‑1
   ATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAG                                                                                                       <  1:1095121/91‑1
   ATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAG                                                                                                       <  2:2118715/91‑1
     GTTGAGGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTA                                                                                                     >  1:261902/1‑91
     GTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTA                                                                                                     >  1:1440251/1‑91
     GTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTA                                                                                                     <  2:1619526/91‑1
     GTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTA                                                                                                     <  2:3866945/91‑1
      TTGACGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTAT                                                                                                    <  1:3296465/91‑1
      TTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTAT                                                                                                    >  2:3908721/1‑91
      TTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTAT                                                                                                    >  2:3291477/1‑91
      TTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTAT                                                                                                    <  2:3268541/91‑1
      TTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTAT                                                                                                    >  1:71115/1‑91
       TGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATG                                                                                                   <  1:1113655/91‑1
       TGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATG                                                                                                   >  1:769742/1‑91
       TGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATG                                                                                                   >  1:769407/1‑91
       TGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATG                                                                                                   <  2:459448/91‑1
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  >  2:61962/1‑91
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  <  1:2889235/91‑1
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  >  1:1925780/1‑91
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  >  2:1406441/1‑91
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  >  1:187529/1‑91
        GAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGT                                                                                                  >  1:187417/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                >  1:1171955/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                >  2:3244162/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                >  2:2135589/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                >  1:3824394/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                >  1:174464/1‑91
          AGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTG                                                                                                <  1:3572953/91‑1
           GAATTAATTGGGGATTTCATCAATCCAGTAAGACCAATTCTATATAAATCTGCAAAACTGATTTATAAGGTTTAATTATAAAGTATGTTGG                                                                                               <  2:3014480/91‑1
           GAATTAATTGGGGATTTCATCAAGCCAGTAAGACCAATTCTATATAAATCTGCAAAACTGATTTATAAGGTTTAATTATAAAGTATGTTGG                                                                                               <  2:3014540/91‑1
            AATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGA                                                                                              <  2:2841886/91‑1
            AATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGA                                                                                              >  2:1131708/1‑91
            AATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGA                                                                                              >  1:2605629/1‑91
              TTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAA                                                                                            <  2:3331974/91‑1
                             ATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCA                                                                             <  1:2105108/91‑1
                                  ACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTC                                                                        <  2:2340640/91‑1
                                       TAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACA                                                                   <  1:883134/91‑1
                                        AAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACAT                                                                  <  1:3050080/91‑1
                                             CAATTCTATATAAATTTGCAAAACTTATTTATAATGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTT                                                             <  2:2678720/91‑1
                                             CAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTT                                                             <  2:1145681/91‑1
                                             CAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTT                                                             <  2:1145695/91‑1
                                              AATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTA                                                            <  1:3464419/91‑1
                                              AATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTA                                                            <  1:3464464/91‑1
                                               ATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTAT                                                           <  1:636345/91‑1
                                                                                          AAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTG                <  2:3665902/91‑1
                                                                                          AAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTG                >  1:3676280/1‑91
                                                                                          AAAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTG                >  1:3621385/1‑91
                                                                                           AAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGG               >  1:1338867/1‑91
                                                                                           AAGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGG               >  1:465743/1‑91
                                                                                            AGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGT              <  2:531929/91‑1
                                                                                            AGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGT              <  1:126068/91‑1
                                                                                            AGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGT              <  2:2441984/91‑1
                                                                                            AGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGT              <  2:3090059/91‑1
                                                                                            AGTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGT              <  1:405372/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  1:2210343/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  1:2485327/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  1:2210082/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  1:220657/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  1:2838582/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             <  2:1257754/91‑1
                                                                                             GTATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTC             >  2:725390/1‑91
                                                                                              TATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCT            <  2:1074650/91‑1
                                                                                              TATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCT            >  1:2101013/1‑91
                                                                                              TATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCT            <  2:3810883/91‑1
                                                                                               ATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTT           >  1:2160137/1‑91
                                                                                               ATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTT           >  2:3697708/1‑91
                                                                                               ATGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCGTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTT           <  2:1184433/91‑1
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTA          <  2:726005/91‑1
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTA          <  2:454539/91‑1
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTA          >  1:3051404/1‑91
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTA          >  2:1678310/1‑91
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTA          <  1:2983367/91‑1
                                                                                                TGTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGATCTTA          >  2:3198455/1‑91
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         >  1:387766/1‑91
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  1:992902/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  1:628388/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  1:2326227/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  1:2326219/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         >  2:2408481/1‑91
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         >  2:2408282/1‑91
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  2:60928/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  2:2310425/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  2:2300813/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTAC         <  1:2950632/91‑1
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTCTGCAAATTTATATAGAATTGGACTTAC         >  2:2560883/1‑91
                                                                                                 GTTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAAACTTATAAATAAGTTTTGTAAATTTATATAGAATTGGTATTAt         >  2:2560929/1‑90
                                                                                                  TTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACT        >  1:1855862/1‑91
                                                                                                  TTGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACT        >  1:573369/1‑91
                                                                                                   TGGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTG       <  2:1844587/91‑1
                                                                                                    GGAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGG      <  2:924607/91‑1
                                                                                                     GAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGT     <  1:2797365/91‑1
                                                                                                     GAAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGT     <  1:455955/91‑1
                                                                                                      AAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTT    <  2:595156/91‑1
                                                                                                      AAAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTT    <  1:630520/91‑1
                                                                                                       AAGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTTT   >  1:329196/1‑91
                                                                                                        AGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTTTG  <  2:2194805/91‑1
                                                                                                                                                                                                   
CACATGTTGAAGAATTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/1265407‑1265511
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaagtatgttggaaaGAATTTAAAATTTCAATTTCCAACATACTTTATAATTAAACCTTATAAATAAGTTTTGCAAATTTATATAGAATTGGTCTTACTGGTTTG  <  USA300TCH1516_ALE/1265527‑1265438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.