New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 1265511227 (1.110)11 (0.070) 7/130 NT 5.4% intergenic (+19/‑154) femA_1/dprA Aminoacyltransferase FemA/DNA processing protein DprA
?USA300TCH1516_ALE = 1265527 198 (1.200)intergenic (+35/‑138) femA_1/dprA Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 440 total aligned reads displayed.

TTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTG  >  USA300TCH1516_ALE/1265421‑1265601
                                                                                          |                                                                                          
gttttacatttctaatacaaaaacattgtcgatgtaatgttattttaaggagtaaaaatactgacttaaaaagtgaAAAGTATGTTGgaaa                                                                                            <  1:454022‑M1/15‑1 (MQ=255)
 taattGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACGTATTTATAAGGTTTAATTATAAAGTATGTTGgaaat                                                                                           >  1:1175678/1‑91 (MQ=255)
   attGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattg                                                                                         <  2:1118354/91‑1 (MQ=255)
   attGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattg                                                                                         >  1:1469324/1‑91 (MQ=255)
   attGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattg                                                                                         <  2:3750653/91‑1 (MQ=255)
      ggTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattgaaa                                                                                      >  1:2062602/1‑91 (MQ=255)
       gTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGgaaattgaaat                                                                                     >  2:837054/1‑91 (MQ=255)
            ttCATTAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTaa                                                                                >  2:2084626/1‑91 (MQ=255)
             tcatcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTaaa                                                                               <  2:2827696/91‑1 (MQ=255)
              catcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAt                                                                              <  1:519817/91‑1 (MQ=255)
              catcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAt                                                                              >  1:267203/1‑91 (MQ=255)
               atcaAACTAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAtt                                                                             <  1:1962089/91‑1 (MQ=255)
               atcaAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAtt                                                                             >  2:1178210/1‑91 (MQ=255)
                 cAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCt                                                                           <  2:2194805‑M2/91‑2 (MQ=255)
                  aaaaacattgtcgatgtaatgttattttaaggagtaaaaatactgacttaaaaagtgaAAAGTATGTTGGAAATTGAAATTTTAAATTCtt                                                                          >  1:379107‑M1/59‑91 (MQ=255)
                   aaaacattgtcgatgtaatgttattttaaggagtaaaaatactgacttaaaaagtgaAAAGTATGTTGGAAATTGAAATTTTAAATTCttt                                                                         >  1:258932‑M1/58‑91 (MQ=255)
                    aCCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttc                                                                        <  1:2797365‑M2/91‑5 (MQ=255)
                       aGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaa                                                                     >  1:1855862‑M2/1‑84 (MQ=255)
                        gTAAGTCCAATTCTATATAAATTTGCAGAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                    >  2:2560883‑M2/1‑83 (MQ=255)
                        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                    >  2:2408481‑M2/1‑83 (MQ=255)
                        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                    <  2:2310425‑M2/91‑9 (MQ=255)
                        attgtcgatgtaatgttattttaaggagtaaaaatactgacttaaaaagtgaAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAAc                                                                    >  2:1651261‑M1/53‑91 (MQ=255)
                         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                   >  1:3051404‑M2/1‑82 (MQ=255)
                         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                   <  1:2983367‑M2/91‑10 (MQ=255)
                           aGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacata                                                                 >  1:2101013‑M2/1‑80 (MQ=255)
                            gACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatac                                                                <  1:2838582‑M2/91‑13 (MQ=255)
                            gACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatac                                                                <  2:1257754‑M2/91‑13 (MQ=255)
                            gACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatac                                                                <  1:2485327‑M2/91‑13 (MQ=255)
                              ccAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactt                                                              >  1:465743‑M2/1‑77 (MQ=255)
                               cAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatacttt                                                             >  1:3676280‑M2/1‑76 (MQ=255)
                               cAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatacttt                                                             >  1:3621385‑M2/1‑76 (MQ=255)
                                aaTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAAgaatttaaaatttcaatttccaacatacttta                                                            <  1:3464419‑M1/91‑33 (MQ=255)
                                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                           >  2:3370828/1‑91 (MQ=255)
                                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                           >  2:2008801/1‑91 (MQ=255)
                                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                           <  2:2588945/91‑1 (MQ=255)
                                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTCTGTTGGAACTTCAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                         >  2:3594009/1‑91 (MQ=255)
                                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                         <  2:2784965/91‑1 (MQ=255)
                                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                         <  1:3085348/91‑1 (MQ=255)
                                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                         >  2:1584709/1‑91 (MQ=255)
                                    cTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACt                                                        <  1:1250443/91‑1 (MQ=255)
                                    cTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACt                                                        >  1:86512/1‑91 (MQ=255)
                                     tatataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                       <  2:3842090/91‑1 (MQ=255)
                                     tatataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                       <  2:1201820/91‑1 (MQ=255)
                                     tatataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                       >  1:215382/1‑91 (MQ=255)
                                       tataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtttt                                                     >  1:3198686/1‑91 (MQ=255)
                                        ataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                    >  1:1653384/1‑91 (MQ=255)
                                        ataAATTCGCAAAACTTATTTACAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                    >  2:419883/1‑91 (MQ=255)
                                          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTaa                                                  <  1:1871790/91‑1 (MQ=255)
                                           aaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAg                                                 >  2:2469500/1‑91 (MQ=255)
                                            aTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                <  1:3724582/91‑1 (MQ=255)
                                                gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGt                                            >  1:3893146/1‑91 (MQ=255)
                                                 cAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTGTTTCCAACATACTTTTCACTTTTTAAGTCAGTa                                           >  1:3502793/1‑91 (MQ=255)
                                                 cAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTa                                           >  2:3689395/1‑91 (MQ=255)
                                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                       >  1:1292634/1‑91 (MQ=255)
                                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                       <  2:3136096/91‑1 (MQ=255)
                                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                       <  1:273529/91‑1 (MQ=255)
                                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                       >  2:3626452/1‑91 (MQ=255)
                                                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                      <  1:1096069/91‑1 (MQ=255)
                                                         atttatAAGGTTTAATTGTAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACt                                   <  1:3388440/91‑1 (MQ=255)
                                                         atttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACt                                   <  1:103970/91‑1 (MQ=255)
                                                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                  >  1:1404479/1‑91 (MQ=255)
                                                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                  >  1:2927952/1‑91 (MQ=255)
                                                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                  >  1:3859076/1‑91 (MQ=255)
                                                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                  >  2:482722/1‑91 (MQ=255)
                                                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                 <  2:3495082/91‑1 (MQ=255)
                                                            tataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCt                                >  2:2136705/1‑91 (MQ=255)
                                                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                               >  1:3831711/1‑91 (MQ=255)
                                                               aaGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaa                             <  2:2753030/91‑1 (MQ=255)
                                                                aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaa                            >  1:2329090/1‑91 (MQ=255)
                                                                aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAAGTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaa                            >  2:3257313/1‑91 (MQ=255)
                                                                 ggTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaaa                           >  2:611740/1‑91 (MQ=255)
                                                                   tttAATTATAGAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                         <  1:1693856/91‑1 (MQ=255)
                                                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                        >  1:597642/1‑91 (MQ=255)
                                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                      >  2:171545/1‑91 (MQ=255)
                                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                      <  1:1326857/91‑1 (MQ=255)
                                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                      <  1:2176766/91‑1 (MQ=255)
                                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                      >  2:1397044/1‑91 (MQ=255)
                                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaat                  <  1:636345‑M2/91‑59 (MQ=255)
                                                                           taAAGTATGTTGGAAATTTAAATTCTAAATTCTTTCCAACATCCTTTTCACTTATTAAGTCCGTATTTTTACTCCTTAAAATAACATTTCa                 >  2:1003103/1‑91 (MQ=255)
                                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattg                <  2:1145681‑M2/91‑61 (MQ=255)
                                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaacattataaataagttttgcaaatttatatagaattg                <  2:2678720‑M2/91‑61 (MQ=255)
                                                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                <  2:1066380‑M1/91‑1 (MQ=255)
                                                                              aGTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggt              <  1:405372‑M1/91‑79 (MQ=255)
                                                                               gTATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtc             <  1:2210082‑M1/91‑80 (MQ=255)
                                                                                tATGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtct            <  2:3810883‑M1/91‑81 (MQ=255)
                                                                                TATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc            >  2:2939976‑M1/1‑91 (MQ=255)
                                                                                  tGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtctta          <  2:726005‑M1/91‑83 (MQ=255)
                                                                                  tGTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtctta          >  1:3171343‑M1/1‑9 (MQ=255)
                                                                                  tGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtctta          <  1:883134‑M2/91‑67 (MQ=255)
                                                                                   gTTGGAAAgaatttaatatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttac         <  2:3039768‑M1/91‑84 (MQ=255)
                                                                                   gTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttac         <  1:2326219‑M1/91‑84 (MQ=255)
                                                                                   gTTGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttac         <  2:2300813‑M1/91‑84 (MQ=255)
                                                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg        >  2:2024484‑M1/1‑91 (MQ=255)
                                                                                     tGGAAAgaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactg       <  2:1844587‑M1/91‑86 (MQ=255)
                                                                                      GGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt      >  2:2375314‑M1/1‑91 (MQ=255)
                                                                                      GGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt      >  1:3559610‑M1/1‑91 (MQ=255)
                                                                                        aaagaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtt    <  1:630520‑M1/91‑89 (MQ=255)
                                                                                        aaagaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtt    <  2:595156‑M1/91‑89 (MQ=255)
                                                                                         aagaatttaaaatttcaatttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggttt   >  1:329196‑M1/1‑2 (MQ=255)
                                                                                          ATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTg  >  2:3104821‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                          
TTAATTGGTGATTTCATCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTG  >  USA300TCH1516_ALE/1265421‑1265601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.