BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1265511	227 (1.110)	11 (0.070)	7/130	NT	5.4%	intergenic (+19/‑154)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA
*	?	USA300TCH1516_ALE	= 1265527	198 (1.200)	11 (0.070)	7/130	NT	5.4%	intergenic (+35/‑138)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 377 total aligned reads displayed.

TCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAA  >  USA300TCH1516_ALE/1265437‑1265617

 cAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCt                                                                                           <  2:2194805‑M2/91‑2 (MQ=255)

    aCCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttc                                                                                        <  1:2797365‑M2/91‑5 (MQ=255)

     aacgttgtcgatgtaatgttattttaaggagtaaaaatactgacttaaaaagtgaAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTcc                                                                                       >  1:3554600‑M1/56‑91 (MQ=255)

      cAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttcca                                                                                      <  2:1844587‑M2/91‑7 (MQ=255)

        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                                    >  2:2408481‑M2/1‑83 (MQ=255)

        gTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATATTAAATTCtttccaac                                                                                    <  2:3039768‑M2/91‑9 (MQ=255)

        ataATACCAATTCTATATAAATTTACAAAACTTATTTATAAGTTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaac                                                                                    >  2:2560929‑M2/2‑83 (MQ=255)

         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                                   >  1:3051404‑M2/1‑82 (MQ=255)

         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                                   <  2:726005‑M2/91‑10 (MQ=255)

         tAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaaca                                                                                   >  2:1678310‑M2/1‑82 (MQ=255)

          aaGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacat                                                                                  >  2:3697708‑M2/1‑81 (MQ=255)

           aGACCAATACTATATAAATTTGCAAACCTTATATATCACGCTTAACCATAAAATATGTTTGTGATTGCAAATGTATATTCTTTACAACATa                                                                                 >  2:3810927/1‑91 (MQ=255)

            gACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatac                                                                                <  1:2485327‑M2/91‑13 (MQ=255)

             aCCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatact                                                                               <  1:405372‑M2/91‑14 (MQ=255)

              ccAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactt                                                                              >  1:465743‑M2/1‑77 (MQ=255)

                aaTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACtttt                                                                            >  2:362538/1‑91 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGTAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           <  2:1629058/91‑1 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           >  2:205894/1‑91 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           >  2:3770823/1‑91 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           >  2:2008801/1‑91 (MQ=255)

                 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAAATATAAAGTATGTTGGATATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                           <  2:1194153/91‑1 (MQ=255)

                   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                                         <  1:3085348/91‑1 (MQ=255)

                    cTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACt                                                                        >  1:86512/1‑91 (MQ=255)

                     tatataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtt                                                                       >  1:215382/1‑91 (MQ=255)

                      atataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                      >  1:329774/1‑91 (MQ=255)

                       tataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtttt                                                                     >  2:2366008/1‑91 (MQ=255)

                        ataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                                    >  2:3083205/1‑91 (MQ=255)

                        ataAATTCGCAAAACTTATTTACAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttttt                                                                    >  2:419883/1‑91 (MQ=255)

                          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTaa                                                                  >  2:2101066/1‑91 (MQ=255)

                           aaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAg                                                                 <  2:1784905/91‑1 (MQ=255)

                            aTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGGAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                                <  2:3677027/91‑1 (MQ=255)

                             tttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTc                                                               >  2:3494645/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              >  2:2127516/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              >  1:3621225/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              >  1:3715742/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              >  1:166912/1‑91 (MQ=255)

                              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                              <  1:2678691/91‑1 (MQ=255)

                               tGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGCTGGAAATTCAAATTTTAAATTATTTCCAACATACTTTTCACTTTTTAAGTCAg                                                             >  1:3158418/1‑91 (MQ=255)

                                gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGt                                                            >  1:3893146/1‑91 (MQ=255)

                                   aaaCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                         <  1:3750486/91‑1 (MQ=255)

                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                       >  2:3845298/1‑91 (MQ=255)

                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                       <  2:2475887/91‑1 (MQ=255)

                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                       <  1:273529/91‑1 (MQ=255)

                                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                       <  2:3136096/91‑1 (MQ=255)

                                      catattgatAAGGGTTTATTATAAAGTATGTTGTATGTTTAGGTTTTCCATTCTTTCCAATATAATTTTCACTTCTTAAGTAGGTAttttt                                                      >  2:3544757/3‑91 (MQ=255)

                                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                      <  1:1096069/91‑1 (MQ=255)

                                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                      <  1:1901022/91‑1 (MQ=255)

                                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                      <  2:126389/91‑1 (MQ=255)

                                        tatttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTAc                                                    >  1:1179501/1‑91 (MQ=255)

                                         atttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACt                                                   <  1:103970/91‑1 (MQ=255)

                                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                                  >  2:482722/1‑91 (MQ=255)

                                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                 >  1:2842920/1‑91 (MQ=255)

                                            tataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCt                                                >  2:647457/1‑91 (MQ=255)

                                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                               >  2:3301684/1‑91 (MQ=255)

                                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                               >  1:3831711/1‑91 (MQ=255)

                                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGAATTTTTACTCCtt                                               <  2:2243013/91‑1 (MQ=255)

                                              taAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTa                                              >  1:479452/1‑91 (MQ=255)

                                               aaGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaa                                             <  2:2753030/91‑1 (MQ=255)

                                                aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaa                                            >  1:3403169/1‑91 (MQ=255)

                                                aGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaa                                            >  1:2329090/1‑91 (MQ=255)

                                                 ggTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaaa                                           <  1:2562753/91‑1 (MQ=255)

                                                  gTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAAt                                          >  1:1235419/1‑91 (MQ=255)

                                                   tttAATTATAGAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                                         <  1:1693856/91‑1 (MQ=255)

                                                   tttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATa                                         >  1:220106/1‑91 (MQ=255)

                                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                        >  1:597642/1‑91 (MQ=255)

                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                      <  1:1326857/91‑1 (MQ=255)

                                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                      <  2:2308831/91‑1 (MQ=255)

                                                       aTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACAt                                     <  1:378928/91‑1 (MQ=255)

                                                         tataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTa                                   <  1:3276246/91‑1 (MQ=255)

                                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTCTTAAGTCAGTATTTTTACTCCTTAAAATAACATTAc                                  >  2:3117227/1‑91 (MQ=255)

                                                           taAAGTATGTTGGAAATTTAAATTCTAAATTCTTTCCAACATCCTTTTCACTTATTAAGTCCGTATTTTTACTCCTTAAAATAACATTTCa                                 >  2:1003103/1‑91 (MQ=255)

                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattg                                <  2:1145695‑M2/91‑61 (MQ=255)

                                                            aaaGTATGTTGGAAATTGAAATTTTAAATTCtttccaacatactttataattaaacattataaataagttttgcaaatttatatagaattg                                <  2:2678720‑M2/91‑61 (MQ=255)

                                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                <  1:2014007‑M1/91‑1 (MQ=255)

                                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                <  1:1865223‑M1/91‑1 (MQ=255)

                                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                <  1:632390‑M1/91‑1 (MQ=255)

                                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                <  2:1066380‑M1/91‑1 (MQ=255)

                                                                TATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGAc                            >  2:2939976‑M1/1‑91 (MQ=255)

                                                                   GTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAAt                         >  2:1089948‑M1/1‑91 (MQ=255)

                                                                      GGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                      <  1:3857189‑M1/91‑1 (MQ=255)

                                                                         AATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGttttt                   <  2:282003‑M1/91‑1 (MQ=255)

                                                                           ttgaaattTTAACTACTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 <  2:558455/91‑1 (MQ=255)

                                                                           ttgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 <  1:688166/91‑1 (MQ=255)

                                                                           ttgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 <  2:3252749/91‑1 (MQ=255)

                                                                           ttgaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                 <  1:3490124/91‑1 (MQ=255)

                                                                            tgaaattTTAAATTCtttccaacatactttataattaaaccttataaataagttttgcaaatttatatagaattggtcttactggtttgat                <  1:2105108‑M2/91‑77 (MQ=255)

                                                                             gaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAt               >  1:1433332/1‑91 (MQ=255)

                                                                             gaaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAt               >  2:1431612/1‑91 (MQ=255)

                                                                              aaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAtt              <  1:896788/91‑1 (MQ=255)

                                                                              aaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAtt              <  1:2622108/91‑1 (MQ=255)

                                                                              aaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAtt              >  1:1281263/1‑91 (MQ=255)

                                                                               aattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTa             >  1:2424773/1‑91 (MQ=255)

                                                                                 ttttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGa           <  1:3015120/91‑1 (MQ=255)

                                                                                   ttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaaa         >  2:865822/1‑91 (MQ=255)

                                                                                   ttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaaa         >  1:2213979/1‑91 (MQ=255)

                                                                                    tAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAAt        <  2:1466981/91‑1 (MQ=255)

                                                                                     aaaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATg       >  2:2728448/1‑91 (MQ=255)

                                                                                      aaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGt      <  2:2896390/91‑1 (MQ=255)

                                                                                       aTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTCTGTATTAGAAATGTa     >  1:1310933/1‑91 (MQ=255)

                                                                                          cTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTaaaa  >  2:1733341/1‑91 (MQ=255)

TCAAACCAGTAAGACCAATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAA  >  USA300TCH1516_ALE/1265437‑1265617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.