| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1332932 = | 122 (0.600) | 14 (0.090) | 5/124 | NT | 11.7% | intergenic (+142/+80) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA |
| ? | USA300TCH1516_ALE | 1332990 = | 117 (0.740) | intergenic (+200/+22) | hfq/bsaA_1 | RNA‑binding protein Hfq/Glutathione peroxidase BsaA | |||||
Only 100 of 133 total aligned reads displayed.
CGAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1333039‑1332932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttatatgaagcg‑ttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAACAA > USA300TCH1516_ALE/1332990‑1333079 CGAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACC < 2:3428162/91‑1 GAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAGAGTCGTATCATATATTGACTCGACCT < 2:1502731/91‑1 GAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT > 1:3825695/1‑91 GAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT < 1:1417103/91‑1 GAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCT > 1:145873/1‑91 AAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT < 2:446339/91‑1 AAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT < 2:2227968/91‑1 AAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT < 2:538067/91‑1 AAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTT < 2:538084/91‑1 AAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTT < 2:2881602/91‑1 AGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTA > 1:1442246/1‑91 AGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTA > 2:1174586/1‑91 AGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTAGTATCATATATTGACTCGACCTTTA > 1:3668477/1‑91 GAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTAT > 1:2546999/1‑91 AGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATA < 2:2219098/91‑1 AGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATA < 2:1002513/91‑1 GAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAACACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATAT > 2:392824/1‑91 GAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATAT > 2:2411593/1‑91 AATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA < 1:2446515/91‑1 AATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA < 2:3639415/91‑1 AATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA < 1:3727770/91‑1 AATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA < 2:884177/91‑1 AATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGA < 1:3298701/91‑1 ATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAA > 1:3531635/1‑91 ATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAA < 1:1389988/91‑1 TAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAG > 1:1388858/1‑91 TAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAG < 2:892021/91‑1 AGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGC < 1:636594/91‑1 AGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGC < 1:1594295/91‑1 AGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGC < 2:2389211/91‑1 GAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG > 1:112299/1‑91 GAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG > 2:2714026/1‑91 AAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑T < 2:2328338/91‑1 AAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑T > 2:3765006/1‑91 AAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TT > 1:1451073/1‑91 AAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TT > 1:1451072/1‑91 AAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTT < 2:3881900/91‑1 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGCAGCG‑TTTT > 2:376463/1‑91 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT > 2:1733182/1‑91 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT > 1:429977/1‑91 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT < 1:1186524/91‑1 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT > 1:3412387/1‑91 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT < 1:1186633/91‑1 AATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT < 1:2680470/91‑1 TATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCT > 2:795658/1‑91 AAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTT > 1:2717893/1‑91 AAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATAAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTT > 2:916684/1‑91 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTCTTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTT > 2:1558711/1‑91 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTT > 1:2428644/1‑91 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTT > 1:2428486/1‑91 AAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTT > 1:3256493/1‑91 AGTCGTATCATATATTGACTCGACCTTTATATGAAGCGTTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTT > 2:130478/1‑91 AGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTC > 2:1352057/1‑91 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG < 2:3628153/91‑1 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG > 2:3522069/1‑91 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG < 2:3473155/91‑1 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG < 1:2194975/91‑1 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG < 1:485401/91‑1 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGG < 1:488593/91‑1 CTTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTATTTGAGG > 2:3522060/1‑91 TTTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGT < 2:2869352/91‑1 TTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTG > 1:2247246/1‑91 TTATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTG > 1:2819037/1‑91 TATGTGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGATGTGC < 1:3122190/91‑1 TATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGC > 1:3410065/1‑91 ATATGATGCG‑TTTTATTTGCTATGTTCTTGTTTATTTTATAATTATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTTGAGGTGC < 2:723527/91‑1 ATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCA < 2:1636739/91‑1 ATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCA > 1:2172540/1‑91 ATATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCA < 1:3358213/91‑1 ATGAATCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAA < 2:1220448/91‑1 ATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAA < 1:2547052/91‑1 ATGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAA < 2:1534536/91‑1 TGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGATGTTCAAAT > 2:2692293/1‑91 TGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAAT > 2:2193628/1‑91 TGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAAT > 1:2643312/1‑91 TGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAAT > 2:2532569/1‑91 TGAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAAT > 1:312330/1‑91 GAAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTTATGTGCAAATC > 2:2479466/1‑91 AAGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCG > 1:97847/1‑91 AGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGT > 1:3270762/1‑91 AGCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGT > 2:2590552/1‑91 GCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTT > 2:502/1‑91 GCG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTT > 2:692507/1‑91 CG‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTTTGGTTCAAATCGTTT > 2:3091359/1‑91 G‑TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTA > 1:3395745/1‑91 TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAA > 1:765490/1‑91 TTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAA > 1:1284925/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:804820/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:803907/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC < 2:2983137/91‑1 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:803685/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC < 2:2983064/91‑1 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:1650522/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:337914/1‑91 TTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAAC > 1:305765/1‑91 TTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGTGTTGTATTTCGTTTAACA > 2:2944032/1‑91 TTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAACA > 2:1671394/1‑91 TTATTTGCTATGAGCTAGTATATTTCATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCTAATAGTTTTACA > 2:2944424/1‑91 TATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAACAA > 1:3404562/1‑91 TATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAACAA > 2:3357209/1‑91 CGAAAGAGAAATAGAAAAATTATTATAAAATATACTAGCTCATAGCAAATAAAACGCTTCATATAAAGTCGTATCATATATTGACTCGACCTTTATATGAAGCG‑TTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1333039‑1332932‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctttatatgaagcg‑ttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGG‑TTTTTTTTGAGGTGCAAATCGTTTAACAA > USA300TCH1516_ALE/1332990‑1333079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |