BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1332932 =	122 (0.600)	14 (0.090)	5/124	NT	11.7%	intergenic (+142/+80)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA
*	?	USA300TCH1516_ALE	1332990 =	117 (0.740)	14 (0.090)	5/124	NT	11.7%	intergenic (+200/+22)	hfq/bsaA_1	RNA‑binding protein Hfq/Glutathione peroxidase BsaA

Only 100 of 263 total aligned reads displayed.

GACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACAAC  >  USA300TCH1516_ALE/1332901‑1333080

gACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAt                                                                                           <  1:115727/91‑1 (MQ=255)

  cAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAttt                                                                                         >  1:1201734/1‑91 (MQ=255)

  cAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTAttt                                                                                         >  2:2389014/1‑91 (MQ=255)

     gATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCt                                                                                      <  2:2221044/91‑1 (MQ=255)

      aTACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTa                                                                                     <  1:112020/91‑1 (MQ=255)

           aTAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGc                                                                                <  2:1995290/91‑1 (MQ=255)

            tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTCTGAGCt                                                                               >  1:1701920/1‑91 (MQ=255)

            tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                                               <  2:2973959/91‑1 (MQ=255)

            tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                                               <  1:1402661/91‑1 (MQ=255)

            tAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCt                                                                               <  1:3495233/91‑1 (MQ=255)

             agagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa                                                                              <  2:1522134/91‑1 (MQ=255)

             agagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTa                                                                              <  2:1090072/91‑1 (MQ=255)

              gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                                             >  2:3859458/1‑91 (MQ=255)

              gagGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAg                                                                             <  1:2750920/91‑1 (MQ=255)

               agGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGt                                                                            >  2:1138250/1‑91 (MQ=255)

               agGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGt                                                                            <  1:524642/91‑1 (MQ=255)

                ggAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGta                                                                           >  2:3585437/1‑91 (MQ=255)

                ggAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGta                                                                           <  1:113526/91‑1 (MQ=255)

                  gctcatagcaaatAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGtata                                                                         >  1:2426665‑M1/14‑91 (MQ=255)

                    tGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAtt                                                                       >  2:573697/1‑91 (MQ=255)

                     gTTTGTAATAAAAACGCTTCATATATAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATAttt                                                                      <  1:3695040/91‑1 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTGAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                                   >  2:3878748/1‑91 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGTGTTTTATTTGCTATGAGCTAGTATATTTtat                                                                   >  1:2341754/1‑91 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                                   <  1:1994807/91‑1 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                                   >  2:2782579/1‑91 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtat                                                                   >  1:456189/1‑91 (MQ=255)

                        tGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGATAGTATATTTtat                                                                   >  1:3952138/1‑91 (MQ=255)

                         gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                                                  <  2:1287759/91‑1 (MQ=255)

                         gTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTtata                                                                  >  1:134186/1‑91 (MQ=255)

                          taataaAAACGCTTCATATAAAGGTCGCGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                                                 >  2:2737328/1‑91 (MQ=255)

                          taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                                                 <  1:136222/91‑1 (MQ=255)

                          taataaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                                                 >  1:154983/1‑91 (MQ=255)

                          taataaAAACGCTTCATATAAAGGTCGAGTCAATATACGATACGACCTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTataa                                                                 >  1:3152344/1‑91 (MQ=255)

                             taaAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTAtaataa                                                              <  1:1950291/91‑1 (MQ=255)

                             taaAAACGCTACAAATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGATTTATTTGCTATGAGCTAGTATATTTTAtaataa                                                              <  2:104004/91‑1 (MQ=255)

                               AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                                            >  2:1733182‑M1/1‑91 (MQ=255)

                               AAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtt                                                            <  1:2680470‑M1/91‑1 (MQ=255)

                                 AACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAtttt                                                          >  1:1451073‑M1/1‑91 (MQ=255)

                                  ACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAAttttt                                                         <  2:2328338‑M1/91‑1 (MQ=255)

                                    GCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCt                                                       <  1:1594295‑M1/91‑1 (MQ=255)

                                      TTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAt                                                     >  2:260785‑M1/1‑91 (MQ=255)

                                       TCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTAtt                                                    <  1:3298701‑M1/91‑1 (MQ=255)

                                        CATATAAAGGTCGAGTCAATATATGATACGACTTAATATGAAGCGATTCATTTGCTATGAGCTACTATCTTTTACAATAATTTTTCTAttt                                                   <  2:3781142‑M1/91‑1 (MQ=255)

                                         ATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtc                                                  >  2:2411593‑M1/1‑91 (MQ=255)

                                         ATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTGTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtc                                                  >  2:392824‑M1/1‑91 (MQ=255)

                                          TATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTtct                                                 <  2:2219098‑M1/91‑1 (MQ=255)

                                           ATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTCTATAATAATTTTTCTATTtctc                                                <  2:3190776‑M1/91‑1 (MQ=255)

                                            TAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTctct                                               >  1:1442246‑M1/1‑91 (MQ=255)

                                             aaagtcgtatcatatattgactcgacctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt                                              >  1:3731372‑M2/45‑91 (MQ=255)

                                             aaagtcgtatcatatattgactcgacctttatatgaagcgttttATTTGCTATAAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt                                              >  2:916684‑M2/45‑91 (MQ=255)

                                             AAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCtt                                              <  2:2881602‑M1/91‑1 (MQ=255)

                                              aagtcgtatcatatattgactcgacctttatatgaagcgttttCTTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt                                             >  2:1558711‑M2/44‑91 (MQ=255)

                                              aagtcgtatcatatattgactcgacctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt                                             >  1:2428644‑M2/44‑91 (MQ=255)

                                              AAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCttt                                             <  2:538067‑M1/91‑1 (MQ=255)

                                               AGGTCGAGTCAATATATGATACGACTCTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTc                                            <  2:1502731‑M1/91‑1 (MQ=255)

                                                 gTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGa                                          <  1:2198703/91‑1 (MQ=255)

                                                   cGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAtt                                        >  2:2734556/1‑91 (MQ=255)

                                                    gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                                       >  2:2097923/1‑91 (MQ=255)

                                                    gAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGAttt                                       >  1:2218228/1‑91 (MQ=255)

                                                     aGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTg                                      >  2:1342467/1‑91 (MQ=255)

                                                       tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATACTATTTTTTCTATTTCTCTTTCGCTTTGaa                                    >  2:3733772/1‑91 (MQ=255)

                                                       tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGaa                                    >  2:3650924/1‑91 (MQ=255)

                                                       tCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCCATTTCTCTTTCGATTTGaa                                    >  2:719110/1‑91 (MQ=255)

                                                        cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                                   >  1:3603558/1‑91 (MQ=255)

                                                        cAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAAc                                   <  1:104610/91‑1 (MQ=255)

                                                         aaTATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACa                                  <  1:439179/91‑1 (MQ=255)

                                                         aaTATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACa                                  >  2:256084/1‑91 (MQ=255)

                                                          atatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAg                                 <  2:1617932/91‑1 (MQ=255)

                                                           tatatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAgg                                >  1:2892270/1‑91 (MQ=255)

                                                            atatGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGt                               <  1:759276/91‑1 (MQ=255)

                                                               tGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGCACAGGtttt                            >  2:454527/1‑91 (MQ=255)

                                                               tGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttt                            >  1:2190454/1‑91 (MQ=255)

                                                                gATACGACTTTATATGGAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttt                           <  2:3039672/91‑1 (MQ=255)

                                                                  tACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGttttttt                         >  1:2601104/1‑91 (MQ=255)

                                                                   aCGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGtttttttt                        >  2:77095/1‑91 (MQ=255)

                                                                       ctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAgg                    <  1:485449‑M2/73‑1 (MQ=255)

                                                                       ctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAgg                    <  2:3628219‑M2/73‑1 (MQ=255)

                                                                       ctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAgg                    <  2:3473155‑M2/73‑1 (MQ=255)

                                                                       ctttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTATTTGAgg                    >  2:3522060‑M2/19‑91 (MQ=255)

                                                                        tttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGt                   <  2:2869352‑M2/74‑1 (MQ=255)

                                                                         ttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTg                  >  1:2819159‑M2/17‑91 (MQ=255)

                                                                         ttatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTg                  >  1:2247246‑M2/17‑91 (MQ=255)

                                                                          tatatgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGc                 >  1:3410065‑M2/16‑91 (MQ=255)

                                                                             atgaatcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCaaa              <  2:1220448‑M2/79‑1 (MQ=255)

                                                                             atgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCaaa              <  2:1534536‑M2/79‑1 (MQ=255)

                                                                             atgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCaaa              <  1:2546333‑M2/79‑1 (MQ=255)

                                                                              tgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAAt             >  2:2193628‑M2/12‑91 (MQ=255)

                                                                              tgaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAAt             >  1:312330‑M2/12‑91 (MQ=255)

                                                                               gaagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTTATGTGCAAATc            >  2:2479466‑M2/11‑91 (MQ=255)

                                                                                aagcgttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCg           >  1:97821‑M2/10‑91 (MQ=255)

                                                                                    gttttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTa       >  1:3395745‑M2/6‑91 (MQ=255)

                                                                                      tttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaac     >  1:337914‑M2/4‑91 (MQ=255)

                                                                                      tttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaac     >  1:804820‑M2/4‑91 (MQ=255)

                                                                                      tttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaac     >  1:803685‑M2/4‑91 (MQ=255)

                                                                                      tttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaac     >  1:305765‑M2/4‑91 (MQ=255)

                                                                                      tttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaac     <  2:2983064‑M2/88‑1 (MQ=255)

                                                                                       ttATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaaca    >  2:1671394‑M2/3‑91 (MQ=255)

                                                                                       ttATTTGCTATGAGCTAGTATATTTCATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCTAATAGTTTtaca    >  2:2944424‑M2/3‑91 (MQ=255)

                                                                                        tATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaacaa   >  2:3357209‑M2/2‑91 (MQ=255)

                                                                                        tATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTaacaa   >  2:846165‑M2/2‑91 (MQ=255)

GACAAGATACAATAGAGGAATGTTTGTAATAAAAACGCTTCATATAAAGGTCGAGTCAATATATGATACGACTTTATATGAAGCGTTTTATTTGCTATGAGCTAGTATATTTTATAATAATTTTTCTATTTCTCTTTCGATTTGAACAGGTTTTTTTTGAGGTGCAAATCGTTTAACAAC  >  USA300TCH1516_ALE/1332901‑1333080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.