| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1341822 = | 276 (1.350) | 13 (0.070) | 9/148 | NT | 5.6% | intergenic (+230/‑282) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1341877 = | 183 (0.970) | intergenic (+285/‑227) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein | |||||
TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 1:2324184/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 1:3389643/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:215009/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:307774/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG < 1:927556/91‑1TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:817379/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 1:1871518/1‑91TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAG > 2:153971/1‑91 GTTCATTATACAGATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:3045331/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGGAGGGAGC > 1:1971853/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC < 2:1382785/91‑1 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:1594841/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:1594827/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 1:3860795/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 2:2878587/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGC > 2:2878327/1‑91 GTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTAGAAGGCAGC > 1:3553735/1‑91 TTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCA < 1:2725959/91‑1 TTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATACCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCA > 2:3047622/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 1:2882649/1‑91 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT < 1:2274120/91‑1 CATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATT > 2:410452/1‑91 ATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCGCCCGTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT < 2:2749613/91‑1 ATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT < 2:2746451/91‑1 AAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAA > 2:1931446/1‑91 ATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGA > 2:2321978/1‑91 ATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGA > 1:1281262/1‑91 TGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAA > 1:2453306/1‑91 GCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAC > 1:1377885/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 1:603596/1‑91 CCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACA > 2:2333566/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 1:3433406/1‑91 CCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAT > 1:319850/1‑91 CCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTTTCATTAAATTGTTATAGCTTTTTATATTTTTTTAATGAACATA > 2:648135/1‑91 AGTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAGCATATAAGTTTA > 1:1901874/1‑91 AGTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTA > 2:2565205/1‑91 GTCGACATTGAAAAAATGAAAACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAA > 1:3426350/1‑91 GCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAA > 2:43654/1‑91 CATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAA > 1:765729/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 1:298765/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:423820/1‑91 ATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAT > 2:3162536/1‑91 TTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATG < 1:2438419/91‑1 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGT > 2:316121/1‑91 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGT > 1:691803/1‑91 TTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGAAAAAAAAAAAAAAAAGCTCAAATGT < 2:417397/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 2:3388633/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:2069066/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 1:2979913/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 2:2100391/91‑1 TTCATTAAATTGTTATAGCTTTTTATATTTGAATAATGAACATATAAGTTAAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA < 2:3688729/91‑1 TGTTCATTATACAAATATAAAAAGCTATAACAATTTAATGAAAATGCCCCCTTCGAAGTCGACATTGAAAAAATGAAAACTTTGAAGGGAGCATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1341917‑1341822‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTA > USA300TCH1516_ALE/1341877‑1341966 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |