BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1341822 =	276 (1.350)	13 (0.070)	9/148	NT	5.6%	intergenic (+230/‑282)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	1341877 =	183 (0.970)	13 (0.070)	9/148	NT	5.6%	intergenic (+285/‑227)	USA300HOU_RS06615/USA300TCH1516_01244	hypothetical protein/hypothetical protein

Only 100 of 281 total aligned reads displayed.

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

ttatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt                                                                                            >  2:1931446‑M1/36‑91 (MQ=255)

ttAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt                                                                                            >  1:2023880/1‑91 (MQ=255)

 tAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTc                                                                                           >  2:3655488/1‑91 (MQ=255)

  aaaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGAGTTCGAAGGGGGCATTTTCa                                                                                          <  2:3459400/91‑1 (MQ=255)

  aaaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCa                                                                                          <  2:2658414/91‑1 (MQ=255)

  aaaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCa                                                                                          <  2:2370691/91‑1 (MQ=255)

   aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt                                                                                         <  1:3375542/91‑1 (MQ=255)

   aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt                                                                                         <  1:1135091/91‑1 (MQ=255)

    aTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAtt                                                                                        >  1:877103/1‑91 (MQ=255)

      gATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaa                                                                                      <  2:3362062/91‑1 (MQ=255)

      gATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaa                                                                                      <  2:3369326/91‑1 (MQ=255)

        tAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAt                                                                                    <  1:3708480/91‑1 (MQ=255)

         aaaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAtt                                                                                   >  1:955463/1‑91 (MQ=255)

           aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 >  1:1682358/1‑91 (MQ=255)

           aaaaGATTGGAAGGGATCGTCTTAGAATGCTCCCTTCAAAGTTGTCATTTGTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt                                                                                 <  2:3670319/91‑1 (MQ=25)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             >  1:1375166/1‑91 (MQ=255)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             >  1:3181214/1‑91 (MQ=255)

               gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata                                                                             <  2:1646631/91‑1 (MQ=255)

                aTTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAg                                                                            >  2:468204/1‑91 (MQ=255)

                 ttGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGc                                                                           >  2:1825755/1‑91 (MQ=255)

                  tGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCt                                                                          <  2:2023882/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  2:2676544/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  1:279264/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  1:554288/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         >  2:3017070/1‑91 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         <  2:157468/91‑1 (MQ=255)

                   ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt                                                                         >  2:2967692/1‑91 (MQ=255)

                     aaTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtttt                                                                       >  1:678128/1‑91 (MQ=255)

                      aTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttttt                                                                      <  2:3754421/91‑1 (MQ=255)

                      aTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttttt                                                                      <  2:1952286/91‑1 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta                                                                     <  1:3845358/91‑1 (MQ=255)

                       tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta                                                                     <  1:2396962/91‑1 (MQ=255)

                          aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat                                                                  >  1:1029233/1‑91 (MQ=255)

                          aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATCAAATTGCTATACCTTTTTatat                                                                  >  2:1397775/1‑91 (MQ=255)

                           tCGTCTTTAAATCCTCCCTTGAAAGTTTTCTTTTTTTCAATGTCGACTTCGTAGGGGGCATTTTCATTAAATTGTTATAGATTTTTATAtt                                                                 >  2:1323879/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCTATTTTTACTTTGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAttcg                                                               >  2:3614440/1‑89 (MQ=21)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               <  1:33959/91‑1 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               >  2:3083017/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               >  2:1552150/1‑91 (MQ=255)

                             gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg                                                               <  1:3907430/91‑1 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAACTTGTTATAGCTTTTTATATTTGt                                                              <  2:3576623/91‑1 (MQ=255)

                              tCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt                                                              <  2:3120981/91‑1 (MQ=255)

                               cTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTTTATTTTTTCTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtt                                                             >  2:2321188/1‑90 (MQ=25)

                                ttGAAATGCTCCCTTCAAAGTTTTCATTTTTTCTATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtat                                                            <  1:3244992/91‑1 (MQ=255)

                                ttGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtat                                                            <  2:505729/91‑1 (MQ=255)

                                  gAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATaa                                                          <  2:559662/91‑1 (MQ=255)

                                  gAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATaa                                                          <  2:2507216/91‑1 (MQ=255)

                                   AAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGACGGGCGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAAt                                                         <  2:2749613‑M1/91‑1 (MQ=255)

                                    AATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATg                                                        >  1:2882649‑M1/1‑91 (MQ=255)

                                     atgcccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGa                                                       >  1:1281262‑M2/54‑91 (MQ=255)

                                      tgcccccttcgaagtcgacattgaaaaaatgaaaactttgaagggggcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGaa                                                      >  1:2453306‑M2/53‑91 (MQ=255)

                                      TGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGaa                                                      <  1:2725959‑M1/91‑1 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     >  1:1594827‑M1/1‑91 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     >  2:2878327‑M1/1‑91 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     <  2:1382785‑M1/91‑1 (MQ=255)

                                       GCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATCTGTATAATGAAc                                                     >  1:3045331‑M1/1‑91 (MQ=255)

                                       GCTCCCTCCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAc                                                     >  1:1971853‑M1/1‑91 (MQ=255)

                                        cccccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  2:2333566‑M2/51‑91 (MQ=255)

                                        CTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACa                                                    >  2:817379‑M1/1‑91 (MQ=255)

                                          cccttcgaagtcgacattgaaaaaatgaaaactttgaagggagcatttTCATTAAATTGTTATAGCTTTTTATATTTTTTTAATGAACata                                                  >  2:648135‑M2/49‑91 (MQ=255)

                                          cccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACata                                                  <  2:2124930/91‑1 (MQ=255)

                                           ccTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACatat                                                 <  1:2315067/91‑1 (MQ=255)

                                            cTTCAAAGTTTTCATTTTTTTTATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATTATGTACAtata                                                >  2:2703400/1‑91 (MQ=38)

                                            cTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACAtata                                                <  2:1099392/91‑1 (MQ=255)

                                             ttCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATaa                                               <  1:1324041/91‑1 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              >  2:2956570/1‑91 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  1:22511/91‑1 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  2:1727902/91‑1 (MQ=255)

                                              tCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAg                                              <  1:2425724/91‑1 (MQ=255)

                                                aaaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGtt                                            <  1:322324/91‑1 (MQ=255)

                                                aaaGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGtt                                            <  1:748970/91‑1 (MQ=255)

                                                  agtcgacattgaaaaaatgaaaactttgaagggggcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAGCATATAAGTTTa                                          >  1:1901874‑M2/41‑91 (MQ=255)

                                                  agtcgacattgaaaaaatgaaaactttgaagggggcatttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTa                                          >  2:2565205‑M2/41‑91 (MQ=255)

                                                  aGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTa                                          <  2:1276238/91‑1 (MQ=255)

                                                   gTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTaa                                         >  2:2268434/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   >  1:1696016/1‑91 (MQ=255)

                                                         aTTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGt                                   >  1:601721/1‑91 (MQ=255)

                                                          ttttttCAATGTCGACTTCGAAGGGGGCATTTTCATTACATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTg                                  >  2:3960971/1‑91 (MQ=255)

                                                          ttttttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTg                                  >  1:1507256/1‑91 (MQ=255)

                                                          ttttttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTg                                  >  1:291361/1‑91 (MQ=255)

                                                             tttCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGa                               <  1:3723596/91‑1 (MQ=255)

                                                                cAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTg                            >  1:3590137/1‑91 (MQ=255)

                                                                cAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTg                            <  2:1182054/91‑1 (MQ=255)

                                                                 aaTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGa                           >  1:488445/1‑91 (MQ=255)

                                                                  aTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGaa                          <  2:930459/91‑1 (MQ=255)

                                                                    gTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAgg                        <  1:420198/91‑1 (MQ=255)

                                                                    gTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAgg                        <  1:3520855/91‑1 (MQ=255)

                                                                        aCTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAAt                    <  1:2092470/91‑1 (MQ=255)

                                                                             gAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaaa               >  2:2091644/1‑91 (MQ=255)

                                                                              aaGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaaaa              >  1:2200618/1‑91 (MQ=255)

                                                                              aaGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAAAATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATaaaaaa              <  1:1851575/91‑1 (MQ=255)

                                                                                 ggggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCt           >  1:1034348/1‑91 (MQ=255)

                                                                                 ggggCATTTTCATTAAATGGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGcg           <  1:1173476/91‑2 (MQ=255)

                                                                                  gggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTc          >  1:3433432/1‑91 (MQ=255)

                                                                                  gggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTc          >  1:2489953/1‑91 (MQ=255)

                                                                                   ggCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCa         <  1:1628632/91‑1 (MQ=255)

                                                                                     catttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCaaa       >  1:765729‑M2/6‑91 (MQ=255)

                                                                                      atttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAt      >  2:3162536‑M2/5‑91 (MQ=255)

                                                                                      atttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAAt      >  1:298765‑M2/5‑91 (MQ=255)

                                                                                        ttTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGAAAAAAAAAAAAAAAAGCTCAAATGt    <  2:417397‑M2/89‑1 (MQ=255)

TTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAATGAACATATAAGTTTAAGAAGGTGCGAGTGAAGGAAATAAAAAAGCTCAAATGTAC  >  USA300TCH1516_ALE/1341787‑1341967

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.