| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1341822 = | 276 (1.350) | 13 (0.070) | 9/148 | NT | 5.6% | intergenic (+230/‑282) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1341877 = | 183 (0.970) | intergenic (+285/‑227) | USA300HOU_RS06615/USA300TCH1516_01244 | hypothetical protein/hypothetical protein | |||||
Only 100 of 331 total aligned reads displayed.
TTTAGAATTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAAT > USA300TCH1516_ALE/1341732‑1341912 | tttAGAATTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGa < 2:3574921/91‑1 (MQ=255)tacatttgagcttttttatttccttcactcgcaccttctttaacttatatgttcattattcaaatataaaaagctataacaatttaatgaa < 2:3688729‑M1/1‑1 (MQ=255)tacatttgagcttttttatttccttcactcgcaccttcttaaacttatatgttcattatacaaatataaaaagctataacaatttaatgaa < 2:2100391‑M1/1‑1 (MQ=255)tacatttgagcttttttatttccttcactcgcaccttcttaaacttatatgttcattatacaaatataaaaagctataacaatttaatgaa < 1:2979913‑M1/1‑1 (MQ=255)tacatttgagcttttttatttccttcactcgcaccttcttaaacttatatgttcattatacaaatataaaaagctataacaatttaatgaa < 1:2069066‑M1/1‑1 (MQ=255) acatttgagcttttttatttccttcactcgcaccttcttaaacttatatgttcattatacaaatataaaaagctataacaatttaatgaaa > 1:691803‑M1/90‑91 (MQ=255) tAGAATTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGaaa < 2:2398562/91‑1 (MQ=255) tAGAATTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGaaa < 2:3014148/91‑1 (MQ=255) atttgagcttttttatttccttcactcgcaccttcttaaacttatatgttcattatacaaatataaaaagctataacaatttaatgaAAAt > 2:423820‑M1/88‑91 (MQ=255) aaTTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGc < 1:3466803/91‑1 (MQ=255) aTTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCt < 2:205385/91‑1 (MQ=255) tATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTccc > 2:3375542/1‑91 (MQ=255) tATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTccc > 2:176069/1‑91 (MQ=255) tGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTc < 2:3294447/91‑1 (MQ=255) aCGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCaaa < 2:1239383/91‑1 (MQ=255) cGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAg < 1:3518002/91‑1 (MQ=255) cGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAg > 2:2008875/1‑91 (MQ=255) aaaTTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGtt < 2:1407475/91‑1 (MQ=255) aTTAGCATCGAATAGGGGAAAATGAGTGTTAAGTTTTAAATGAGAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCGAAGtttt < 2:1678834/91‑1 (MQ=255) aTTAGCATCGAATAAGGGAAAATAAGTGTTCAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGtttt > 2:1191710/1‑91 (MQ=255) aTTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGtttt < 2:462468/91‑1 (MQ=255) aTTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGtttt < 2:1836266/91‑1 (MQ=255) aTTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGtttt > 1:737028/1‑91 (MQ=255) ttAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTc < 1:917669/91‑1 (MQ=255) ttAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTc < 1:408250/91‑1 (MQ=255) aGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAt < 2:1520021/91‑1 (MQ=255) gCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtt > 2:1086375/1‑91 (MQ=255) cATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGGAATGCTCCCTTCAAAGTTTTCAttt > 1:3671922/1‑91 (MQ=255) cATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAttt > 1:1675721/1‑91 (MQ=255) aTCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtttt > 1:830964/1‑91 (MQ=255) aTCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtttt > 1:2895338/1‑91 (MQ=255) aTCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtttt < 1:255772/91‑1 (MQ=255) cGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtttttt < 1:3152512/91‑1 (MQ=255) cGAAGAAGGGAAAATAAGGGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCAtttttt < 2:1818370/91‑1 (MQ=255) gAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTc < 2:2474921/91‑1 (MQ=255) gAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTc < 2:3400963/91‑1 (MQ=255) tAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAAt > 1:246202/1‑91 (MQ=255) aaGGGAAAAGAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATg < 1:3789588/91‑1 (MQ=255) aGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGt > 2:2663725/1‑91 (MQ=255) aGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGt > 2:3865665/1‑91 (MQ=255) ggAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCg < 1:1917205/91‑1 (MQ=255) gAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGa < 1:2645898/91‑1 (MQ=255) taaacttatatgttcattatacaaatataaaaagctataacaatttaatgaAAATGCCCCCTTCAAAGTTTTCATTTTTTCAATGTCGACt > 2:2565205‑M1/52‑91 (MQ=255) aaaTAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACt < 2:444240/91‑1 (MQ=255) aTAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTc < 2:649814/91‑1 (MQ=255) tAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCg > 2:3145327/1‑91 (MQ=255) aGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGaa > 1:1871120/1‑91 (MQ=255) tgtTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAgg > 2:58098/1‑91 (MQ=255) gtTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAggg < 2:133617/91‑1 (MQ=255) gtTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAggg < 2:1993022/91‑1 (MQ=255) gtTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAggg < 2:546995/91‑1 (MQ=255) atgttcattatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAgggg > 1:319850‑M1/43‑91 (MQ=255) tgttcattatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAggggg > 1:603596‑M1/42‑91 (MQ=255) gttcattatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGc > 1:1377885‑M1/41‑91 (MQ=255) aGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCa < 1:1404188/91‑1 (MQ=255) aGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCa < 2:782663/91‑1 (MQ=255) tcattatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAt > 1:1281262‑M1/39‑91 (MQ=255) ttatacaaatataaaaagctataacaatttaatgaAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt > 2:1931446‑M1/36‑91 (MQ=255) ttAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCAtttt > 1:2023880/1‑91 (MQ=255) tAAATGATAAGAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTc < 2:2536865/91‑1 (MQ=255) tAAATGATAAAAAAGATTGGAATGGCTCGTCTTGAAATGCTCCCTTCAAAGTTTCCATTTTTTCAATGTCGAATTCGAAGGCGGCATTTTc < 1:1575287/91‑1 (MQ=37) tAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTc > 2:3655488/1‑91 (MQ=255) aaaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCa > 1:1699026/1‑91 (MQ=255) aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt < 1:3375531/91‑1 (MQ=255) aaTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTATTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAt < 2:3244723/91‑1 (MQ=255) aTGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCAtt > 1:1103345/1‑91 (MQ=255) tGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTa > 2:2192486/1‑91 (MQ=255) tGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTa < 1:3232713/91‑1 (MQ=255) gATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaa < 2:3367896/91‑1 (MQ=255) aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa > 1:2184711/1‑91 (MQ=255) aTAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTaaa > 2:138050/1‑91 (MQ=255) aaaaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAAtt > 1:956194/1‑91 (MQ=255) aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt > 2:2643514/1‑91 (MQ=255) aaaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGt < 2:2715566/91‑1 (MQ=255) aaaGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGtt < 1:1884763/91‑1 (MQ=255) aaGATTGGAATGGATCGTCTTGAAATGCTTCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTta < 1:3178129/91‑1 (MQ=255) gATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTtata < 2:1646631/91‑1 (MQ=255) tGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCt > 2:2343327/1‑91 (MQ=255) ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAATTTGTTATAGCtt < 1:3036186/91‑1 (MQ=255) ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt < 1:279264/91‑1 (MQ=255) ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt < 1:554288/91‑1 (MQ=255) ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt < 2:157468/91‑1 (MQ=255) ggAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCtt < 2:868617/91‑1 (MQ=255) aTGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCttttt < 2:3754421/91‑1 (MQ=255) tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta < 1:1634078/91‑1 (MQ=255) tGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTta < 1:2398417/91‑1 (MQ=255) gATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTtata < 2:2918910/91‑1 (MQ=255) aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat > 2:2976693/1‑91 (MQ=255) aTCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTatat > 1:1029233/1‑91 (MQ=255) tCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATAtt < 1:1155602/91‑1 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGACGGGGGCATTTTCATTCAATTGTTATAGCTTTCTATATTTg > 2:3614124/1‑91 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg < 1:3720418/91‑1 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg < 1:33959/91‑1 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg < 1:3907430/91‑1 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg > 2:3083046/1‑91 (MQ=255) gTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTg > 2:1552150/1‑91 (MQ=255) acTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAGTGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGt < 2:3910078/90‑1 (MQ=255) cTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTTTATTTTTTCTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtt > 2:2321188/1‑90 (MQ=25) ttGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtat < 2:507031/91‑1 (MQ=255) ttGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGtat < 2:2842171/91‑1 (MQ=255) | TTTAGAATTTATTGCACGAAATTAGCATCGAATAAGGGAAAATAAGTGTTAAGTTTTAAATGATAAAAAAGATTGGAATGGATCGTCTTGAAATGCTCCCTTCAAAGTTTTCATTTTTTCAATGTCGACTTCGAAGGGGGCATTTTCATTAAATTGTTATAGCTTTTTATATTTGTATAAT > USA300TCH1516_ALE/1341732‑1341912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |