| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1361472 = | 162 (0.800) | 14 (0.080) | 8/140 | NT | 8.7% | intergenic (+11/+282) | USA300HOU_RS06765/USA300TCH1516_01271 | Putative phosphatase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1361520 = | 153 (0.860) | intergenic (+59/+234) | USA300HOU_RS06765/USA300TCH1516_01271 | Putative phosphatase/hypothetical protein | |||||
ATGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1361571‑1361472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaaggcttTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > USA300TCH1516_ALE/1361520‑1361609 ATGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAGAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑G < 2:3345805/91‑1ATGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑G < 1:3942682/91‑1 TGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAATATATCTTATTCAAATATCATGT‑GT < 1:857505/91‑1 TGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GT > 2:2567511/1‑91 TGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GT < 2:210431/91‑1 TGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GT < 1:364116/91‑1 GTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTT > 2:3046442/1‑91 GTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTT > 2:3046745/1‑91 TATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTA < 1:1122508/91‑1 TATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTA > 2:2275846/1‑91 TATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTA > 1:3463657/1‑91 TATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTA > 1:2512589/1‑91 TTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAATTAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGG < 2:3480511/91‑1 TTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGG < 1:1769866/91‑1 TTCAAATCCTCCATAGTATAACTGAAGTCATTGTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAGTATCATGT‑GTTAAGG < 1:3371026/91‑1 TCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGC > 1:3721651/1‑91 CAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCT < 1:793793/91‑1 CAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCT < 1:364031/91‑1 CAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCT < 1:791873/91‑1 CAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCT < 1:522080/91‑1 AAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTT > 2:2224836/1‑91 AAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATG > 1:1497108/1‑91 AAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTT > 2:882898/1‑91 AAGCCTAAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTT > 1:3073976/1‑91 GCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGA > 2:3184477/1‑91 GCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGA > 2:836524/1‑91 TTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTTAAATTGACTTCAGTTATACTATGGAGGATTTGAAAT > 2:1167121/1‑91 TTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAAT > 1:2151035/1‑91 TTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAAT > 1:23603/1‑91 TTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAAT > 2:290115/1‑91 AACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATAC > 1:514509/1‑91 AACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATAC > 1:317039/1‑91 CAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTCTACTATGGAGGATTTGAAATACATATT > 2:932638/1‑91 AGATATCTTATTCAAATATCATGTGGTTAAGGCTTTTTATTTTTTTTTAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTT > 2:2280194/1‑91 TTCAAATATCATGT‑GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAA > 2:1126462/1‑91 GTTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAA > 2:1783510/1‑91 TTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAAT < 1:1985801/91‑1 TTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAAT < 2:1305035/91‑1 TTAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAAT < 2:792669/91‑1 TAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATA > 2:461225/1‑91 TAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATA < 2:876481/91‑1 TAAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATA > 1:825818/1‑91 AAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAG > 1:2729112/1‑91 AAGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAG < 1:2465483/91‑1 AGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGA > 2:819413/1‑91 AGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGA < 1:1252298/91‑1 AGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGA < 1:3808582/91‑1 AGGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGA > 1:2122002/1‑91 GGCTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAG < 2:110630/91‑1 GGCTTTTTATTTTTGTGAAAATGACTGCGGTTATAGTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAGCGAATAGAG < 2:2272407/91‑1 CTTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTA > 1:2038531/1‑91 TTTTTGTTTTTGTGTAAATGACTTCAGTTATACTATGGAGGATTTGAAATACAGATTTTAGATTAGTAATGATATCAAGCGAATAGCGTAA < 2:250847/91‑1 TTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAA < 2:2543110/91‑1 TTTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAA < 2:2542607/91‑1 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAGCGAATAGAGTAAA < 2:880162/91‑1 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 2:2289831/1‑91 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 1:873034/1‑91 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 1:872911/1‑91 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 1:786018/1‑91 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 1:1963989/1‑91 TTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > 1:1282740/1‑91 ATGTATTTCAAATCCTCCATAGTATAACTGAAGTCATTTTCACAAAAATAAAAAGCCTTAACCACAAGATATCTTATTCAAATATCATGT‑GTTAAGGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1361571‑1361472‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttaaggcttTTTATTTTTGTGAAAATGACTTCAGTTATACTATGGAGGATTTGAAATACATATTTTAGATTAGTAATGATATCAAACGAATAGAGTAAA > USA300TCH1516_ALE/1361520‑1361609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |