| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1364100 | 155 (0.760) | 9 (0.050) | 4/144 | NT | 5.8% | coding (157/1518 nt) | katA | Catalase |
| ? | USA300TCH1516_ALE | = 1364118 | 154 (0.840) | coding (175/1518 nt) | katA | Catalase | |||||
AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1364003‑1364100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagaacCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGGTC < USA300TCH1516_ALE/1364118‑1364029 AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATA < 2:682519/91‑1AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATA < 2:682541/91‑1AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATA < 2:682559/91‑1AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATA < 2:698252/91‑1AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATA > 1:249756/1‑91 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTATTGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC < 2:3906681/91‑1 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC > 2:2614112/1‑91 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC < 1:1296111/91‑1 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC < 1:1383034/91‑1 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC < 1:1383180/91‑1 AATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATAC < 1:1684496/91‑1 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC < 2:2218000/91‑1 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC < 2:2218547/91‑1 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC > 1:2986233/1‑91 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC > 1:2986126/1‑91 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC < 1:2834288/91‑1 ATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACC < 1:1696186/91‑1 TAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCA < 1:587493/91‑1 TAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCA < 1:3208369/91‑1 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG < 1:2190198/91‑1 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG < 1:2393117/91‑1 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG < 1:141405/91‑1 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG < 1:142896/91‑1 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG > 1:2742850/1‑91 AGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAG > 2:2305937/1‑91 GTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGA < 1:1250937/91‑1 TATGACAGCGGGGCCTAGGGGACCTCGTTTAATGCAAGATAGTTACTTTTTAGAGCAAATGTCTCAATTTGATTGAGAAGTAATACCAGAA < 1:1775027/91‑1 TATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAA > 2:2690226/1‑91 TATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAA > 1:560108/1‑91 gTGACAGCAGGGCCTAGGGGGCCTCTTTTAATGCAAGATATTTACTGTTTAGGGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAAC < 2:2786225/90‑1 ATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAAC > 2:1707874/1‑91 ATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGAAAATGTCTCAATTTGATAGAGAAGTAATACCAGAAC > 2:3114222/1‑91 GACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACG < 1:1259635/91‑1 GACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACG < 1:454855/91‑1 ACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGT < 2:425346/91‑1 CTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTcc < 1:116171/91‑3 CTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTTC < 1:115847/91‑1 CTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTTC < 2:761575/91‑1 CTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTTC < 2:761554/91‑1 AATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATT < 1:721910/91‑1 AATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATT < 1:721878/91‑1 ACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAA > 2:1876028/1‑91 ACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAA < 2:2321798/91‑1 ACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAA < 2:753394/91‑1 ACCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAA < 2:431932/91‑1 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA > 2:1530106/1‑91 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA > 1:970884/1‑91 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA > 2:3232649/1‑91 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA > 1:533931/1‑91 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA < 1:3747367/91‑1 CCAGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAA < 1:2585705/91‑1 AGAACCTTTGGCATGCATTCGGCGTTCTGGTATTACTTCTCTATCAGGTTGAGACATATGCGCTAAAAAGTAAATATCTTGCATTAAAAGA < 2:1003606/91‑1 AGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGA < 2:1810263/91‑1 AGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGA < 1:1621324/91‑1 AGAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGA < 1:2792851/91‑1 GAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAG < 1:2127790/91‑1 GAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAG < 1:1790624/91‑1 GAACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAG > 2:2727245/1‑91 AACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGG > 2:2884910/1‑91 AACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGG < 2:87790/91‑1 AACCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGG < 2:947329/91‑1 CCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGGTC < 1:2896708/91‑1 CCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGGTC > 2:693584/1‑91 CCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGGTC < 2:989355/91‑1 AAATAGTATGACAGCAGGGCCTAGGGGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1364003‑1364100‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accagaacCTTTGGCATGCATTCGACGTTCTGGTATTACTTCTCTATCAAATTGAGACATTTGCTCTAAAAAGTAAATATCTTGCATTAAAAGAGGTC < USA300TCH1516_ALE/1364118‑1364029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |