BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1364100	155 (0.760)	9 (0.050)	4/144	NT	5.8%	coding (157/1518 nt)	katA	Catalase
*	?	USA300TCH1516_ALE	= 1364118	154 (0.840)	9 (0.050)	4/144	NT	5.8%	coding (175/1518 nt)	katA	Catalase

Only 100 of 219 total aligned reads displayed.

GGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAACCG  >  USA300TCH1516_ALE/1364028‑1364208

ggACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAg                                                                                            <  2:747859/91‑1 (MQ=255)

ggACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAg                                                                                            <  2:2710157/91‑1 (MQ=255)

 gACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGg                                                                                           >  2:693584‑M2/1‑90 (MQ=255)

   ccTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgtt                                                                                         <  2:947329‑M2/91‑4 (MQ=255)

   ccTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgtt                                                                                         <  2:87790‑M2/91‑4 (MQ=255)

    ctctTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttc                                                                                        <  1:1790624‑M2/91‑5 (MQ=255)

     tctTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttct                                                                                       <  1:2792851‑M2/91‑6 (MQ=255)

     tctTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttct                                                                                       <  2:1810263‑M2/91‑6 (MQ=255)

     tctTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttct                                                                                       <  1:1621324‑M2/91‑6 (MQ=255)

       ttttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttctgg                                                                                     >  2:3232649‑M2/1‑84 (MQ=255)

       ttttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttctgg                                                                                     >  2:1530106‑M2/1‑84 (MQ=255)

       ttttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttctgg                                                                                     >  1:970884‑M2/1‑84 (MQ=255)

        tttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttctggt                                                                                    <  2:431932‑M2/91‑9 (MQ=255)

        tttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGgttctggt                                                                                    <  2:753394‑M2/91‑9 (MQ=255)

         ttAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTg                                                                                   <  1:3911919/91‑1 (MQ=255)

          tAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGc                                                                                  <  2:662066/91‑1 (MQ=255)

           aaTGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGcc                                                                                 >  1:1261561/1‑90 (MQ=255)

           aaTGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCa                                                                                 <  2:3089092/91‑1 (MQ=255)

            aTGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCAt                                                                                <  2:567596/91‑1 (MQ=255)

            aTGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCAt                                                                                <  1:538740/91‑1 (MQ=255)

             tGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCAtt                                                                               <  1:3841899/91‑1 (MQ=255)

             tGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCAta                                                                               >  2:1242188/1‑90 (MQ=255)

              gCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCAtta                                                                              <  2:3910083/91‑2 (MQ=255)

               cAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTg                                                                             <  2:702950/91‑1 (MQ=255)

               cAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTg                                                                             <  1:1732539/91‑1 (MQ=255)

               cAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTg                                                                             <  1:1586208/91‑1 (MQ=255)

               cAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTg                                                                             >  1:2717141/1‑91 (MQ=255)

               cAAGATAGTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTTCATTTg                                                                             <  2:602425/91‑1 (MQ=255)

                aaGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTgg                                                                            >  1:1751652/1‑91 (MQ=255)

                 aGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTggg                                                                           >  2:2057568/1‑91 (MQ=255)

                  gATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGa                                                                          >  2:2355495/1‑91 (MQ=255)

                     atgtACTTTTTAGAGCAAATGTCTCAATTGGATAGAGAAGGAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACAt                                                                       <  2:1251793/88‑1 (MQ=255)

                        tACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTa                                                                    >  1:2227430/1‑91 (MQ=255)

                        tACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTa                                                                    <  1:2073949/91‑1 (MQ=255)

                        tACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTa                                                                    >  1:3515611/1‑91 (MQ=255)

                          cTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACt                                                                  <  1:2065619/91‑1 (MQ=255)

                           tttttAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTg                                                                 <  1:1172494/91‑1 (MQ=255)

                            ttttAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGt                                                                <  2:2632290/91‑1 (MQ=255)

                             tttAGCGCAAATGTACCAATTTGATAGAGAAGTAATACCAGAACGTCGTATGCATGCCAAAGGAGCTGGTGTATTTGGGACCTTTACTGTa                                                               >  2:2622560/1‑91 (MQ=255)

                              ttAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTaa                                                              <  1:182459/91‑1 (MQ=255)

                              ttAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTaa                                                              >  1:3756178/1‑91 (MQ=255)

                              ttAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTaa                                                              >  1:3754534/1‑91 (MQ=255)

                                  agCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTaa                                                          >  1:2037107/1‑91 (MQ=255)

                                     aaaTGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGa                                                       <  2:1613850/91‑1 (MQ=255)

                                      aaTGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGat                                                      >  2:1732113/1‑91 (MQ=255)

                                      aaTGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGat                                                      <  2:2177264/91‑1 (MQ=255)

                                         gTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGAtata                                                   <  1:497770/91‑1 (MQ=255)

                                           ctcAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAAc                                                 >  1:3459115/1‑91 (MQ=255)

                                             cAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACaa                                               >  2:2751252/1‑91 (MQ=255)

                                             cAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACaa                                               >  1:1538309/1‑91 (MQ=255)

                                             cAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACaa                                               >  1:926073/1‑91 (MQ=255)

                                              aaTTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATCTAACaaa                                              >  2:3500142/1‑91 (MQ=255)

                                               ctatGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACaaaa                                             >  2:3458065/4‑91 (MQ=255)

                                                tttGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAat                                            <  1:1741949/91‑1 (MQ=255)

                                                 ttGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAata                                           >  2:1438883/1‑91 (MQ=255)

                                                   gATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAAtata                                         >  1:2124606/1‑91 (MQ=255)

                                                   gATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACGAAAGATATAACAAAAtata                                         >  2:3956457/1‑91 (MQ=255)

                                                    aTAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATAc                                        <  1:2811308/91‑1 (MQ=255)

                                                    aTAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATAc                                        >  2:3329431/1‑91 (MQ=255)

                                                       gagaAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTATCTAAAGATATAACAAAATATACGaa                                     >  1:3685836/1‑91 (MQ=255)

                                                          aaGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGc                                  <  1:2361695/91‑1 (MQ=255)

                                                              aaTACCAGAACGTCGAATGCATGCCAAAGgttctggtattacttctctatcaaattgagacatttgctctaaaaagtaaatatcttgcatt                              <  1:721910‑M2/91‑63 (MQ=255)

                                                              aaTACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTaaa                              >  1:2471837/1‑91 (MQ=255)

                                                              aaTACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTaaa                              <  1:1323279/91‑1 (MQ=255)

                                                               aTACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTaaaa                             >  1:2249695/1‑91 (MQ=255)

                                                               aTACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTaaaa                             >  1:525028/1‑91 (MQ=255)

                                                                tACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAat                            <  1:1125181/91‑1 (MQ=255)

                                                                  ccAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAatat                          <  1:1258318/91‑1 (MQ=255)

                                                                   cAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATAtt                         <  2:3706770/91‑1 (MQ=255)

                                                                    aGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtc                        >  2:1994103/1‑91 (MQ=255)

                                                                    aGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtc                        >  2:1994228/1‑91 (MQ=255)

                                                                    aGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtc                        >  1:2751066/1‑91 (MQ=255)

                                                                     ggacgTCGAATGCATGCCAAAGgttctggtattacttctctatcaaattgagacatttgctctaaaaagtaaatatcttgcattaaaagag                       <  1:116171‑M2/89‑70 (MQ=255)

                                                                     gAACGTCGAATGCATGCCAAAGgttctggtattacttctctatcaaattgagacatttgctctaaaaagtaaatatcttgcattaaaagag                       <  2:761575‑M2/91‑70 (MQ=255)

                                                                     gAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtct                       >  1:2876555/1‑91 (MQ=255)

                                                                     gAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtct                       >  1:657830/1‑91 (MQ=255)

                                                                     gAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtct                       <  1:1507022/91‑1 (MQ=255)

                                                                      aaCGTCGAATGCATGCCAGAGGTTCTGGTGCATTTGGGACAGTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATtctc                      <  2:1373411/91‑1 (MQ=255)

                                                                      aaCGTCGAATGCATGCCAAAGGTTGTGGTGCATTTGGGTCATTTACTGGAACTAAAGATATAACAAAATATACGAATGCGAAGAGATtctc                      <  2:2819994/91‑1 (MQ=255)

                                                                       aCGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTctct                     <  1:2195656/91‑1 (MQ=255)

                                                                        cGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTGACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTg                    >  1:3433745/1‑91 (MQ=255)

                                                                           cGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGaaa                 <  1:1704587/91‑1 (MQ=255)

                                                                           cGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGaaa                 >  1:2541097/1‑91 (MQ=255)

                                                                             aaTGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATa               <  1:2801313/91‑1 (MQ=255)

                                                                             aaTGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATa               <  2:2216852/91‑1 (MQ=255)

                                                                              atgcatgcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAg              >  1:2087786/1‑91 (MQ=255)

                                                                              atgcatgcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAg              <  1:3737596/91‑1 (MQ=255)

                                                                              atgcatgcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAg              <  1:3070112/91‑1 (MQ=255)

                                                                                 catgcCAAAGTTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTa           <  2:3762042/91‑1 (MQ=255)

                                                                                 catgcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTa           <  2:2827051/91‑1 (MQ=255)

                                                                                   tgcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAg         <  1:1496311/91‑1 (MQ=255)

                                                                                    gcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGc        <  2:230892/91‑1 (MQ=255)

                                                                                    gcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGc        <  1:3380035/91‑1 (MQ=255)

                                                                                    gcCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGc        >  2:2507459/1‑91 (MQ=255)

                                                                                     ccAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCa       >  1:2620655/1‑91 (MQ=255)

                                                                                        aaGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAAc    <  1:264568/91‑1 (MQ=255)

                                                                                         aGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAAcc   <  2:3074031/91‑1 (MQ=255)

                                                                                          ggTTCTGGTGCTTTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAACCg  <  1:3584597/91‑1 (MQ=255)

                                                                                          ggTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAACCg  <  1:918003/91‑1 (MQ=255)

                                                                                          ggTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAACCg  >  2:2706156/1‑91 (MQ=255)

GGACCTCTTTTAATGCAAGATATTTACTTTTTAGAGCAAATGTCTCAATTTGATAGAGAAGTAATACCAGAACGTCGAATGCATGCCAAAGGTTCTGGTGCATTTGGGACATTTACTGTAACTAAAGATATAACAAAATATACGAATGCTAAAATATTCTCTGAAATAGGTAAGCAAACCG  >  USA300TCH1516_ALE/1364028‑1364208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.