| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1439018 = | 188 (0.920) | 21 (0.110) | 12/146 | NT | 11.0% | intergenic (+16/+224) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1439055 = | 170 (0.920) | intergenic (+53/+187) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1439114‑1439018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT > USA300TCH1516_ALE/1439055‑1439144 TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTT < 2:3227250/91‑1 CCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTC > 1:2014779/1‑91 CTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCG < 2:1608917/91‑1 CTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCG < 1:2214424/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGG < 2:1682333/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGG < 1:3759212/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGG < 1:3758818/91‑1 TTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGG < 1:3758749/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:1059160/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG > 2:2831868/1‑91 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG < 1:313232/91‑1 TTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGG > 2:366303/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 2:3711486/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 1:2827870/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 2:153515/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 1:933198/1‑91 TTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGG > 2:1101861/1‑91 TTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA < 1:3228128/91‑1 TCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATT > 1:340853/1‑91 ATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTG > 1:27942/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAA > 1:227773/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAA > 1:902853/1‑91 CCCCGAGTCACAGTATAATTTTCTGTGCTACGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGTACATATACTCTAAAA > 2:3436592/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAA > 1:2515547/1‑91 CCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAA > 1:691036/1‑91 GAGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGG > 2:1310314/1‑91 AGTCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGA > 2:2343601/1‑91 TCACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAG > 1:3832361/1‑91 CACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGA > 1:676216/1‑91 ACAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAA > 2:2166192/1‑91 CAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAACAAAGGAAGAAC > 1:3585184/1‑91 CAGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAC > 1:3805671/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 1:3933442/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 1:3727898/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 1:3727837/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 2:3317616/1‑91 AGTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGAAAGAAaa > 2:185402/1‑89 AGTATAATCTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACA > 2:3317638/1‑91 GTATAATTTTCTGTGCTTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAG > 1:786206/1‑91 TCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAA < 1:2111643/91‑1 ggaGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 2:3791040/88‑1 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 1:1092288/91‑1 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 1:1092355/91‑1 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG > 1:2658935/1‑91 GGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG > 1:2658746/1‑91 GGGGAATTTTTATGCATGATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAG < 1:3392640/91‑1 GGGAATTTTTATGCATTATAGATGACTGTAGATAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT < 2:313503/91‑1 GGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT > 2:3123670/1‑91 GGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGT > 2:3123851/1‑91 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 2:1097148/1‑91 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 1:850701/1‑91 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 1:568710/1‑91 GGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTA > 1:1785492/1‑91 GAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT > 2:1379476/1‑91 GAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT > 1:2870529/1‑91 GAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT < 1:1271020/91‑1 GAATTGTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT < 2:3202550/91‑1 GAATTATTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAT < 2:3202193/91‑1 AATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT < 2:925059/91‑1 TCCTTTTTTAGAGTATATGTCCAAGCATGTTTTCTACAGTCATCTATAATGCATAAAAATTCCCCGAGTCACAGTATAATTTTCTGTGCTTCGGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1439114‑1439018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATT > USA300TCH1516_ALE/1439055‑1439144 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |