| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1439018 = | 188 (0.920) | 21 (0.110) | 12/146 | NT | 11.0% | intergenic (+16/+224) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein |
| ? | USA300TCH1516_ALE | 1439055 = | 170 (0.920) | intergenic (+53/+187) | lysA/USA300HOU_RS07135 | Diaminopimelate decarboxylase/hypothetical protein | |||||
Only 100 of 322 total aligned reads displayed.
TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAA > USA300TCH1516_ALE/1438928‑1439108 | ttAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAAT > 1:685950‑M1/1‑91 (MQ=255)ttAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAAT > 1:2535548‑M1/1‑91 (MQ=255) atactttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataataatTc < 2:3202193‑M1/2‑1 (MQ=255) atactttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTc > 1:2870529‑M1/90‑91 (MQ=255) actttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttatctacagtcatctataatgcataaaaatTccc < 2:313503‑M1/4‑1 (MQ=255) aaaGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCC > 1:3055506‑M1/1‑91 (MQ=255) tttttggcaAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCC > 2:3380337‑M1/5‑91 (MQ=255) ctttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctatcatgcataaaaatTcccc < 1:3392640‑M1/5‑1 (MQ=255) ctttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaattctcc < 2:3791040‑M1/5‑4 (MQ=255) ctttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTcccc < 1:1092288‑M1/5‑1 (MQ=255) aGATGGCTAATCACGTGCAGTTATAAGGGGACAAGCGTTAAGCGAACTCATTATTAATGATACAAACTAAAAATAAACCAAGTTATCTCCg > 2:138653/1‑91 (MQ=255) ttctaactaaaaatgtgctgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGa < 1:2111643‑M1/7‑1 (MQ=255) tGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAg < 1:729662/91‑1 (MQ=255) tGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAg > 1:2711685/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 1:2112442/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 2:36403/1‑91 (MQ=255) ggCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGc > 1:3807578/1‑91 (MQ=255) gCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGca > 1:2037367/1‑91 (MQ=255) aaaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcaca < 1:1977932/91‑1 (MQ=255) aaaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcaca > 2:2430737/1‑91 (MQ=255) aaaGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGcaca > 1:3575488/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 2:2525155/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 1:104826/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 1:2229270/1‑91 (MQ=255) cGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAt > 2:484729/1‑91 (MQ=255) gTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAtt < 1:2475335/91‑1 (MQ=255) gTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAtt > 1:237181/1‑91 (MQ=255) gTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAAtt < 2:907979/91‑1 (MQ=255) aaGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATtata > 2:2357237/1‑91 (MQ=255) aGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttc < 1:1262541‑M1/91‑18 (MQ=255) aGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATAc < 1:1802107/91‑1 (MQ=255) ttttctttcttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACt > 2:185402‑M1/67‑91 (MQ=255) tgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACt > 2:3317616‑M1/67‑91 (MQ=255) tgttcttccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACt > 1:3727898‑M1/67‑91 (MQ=255) gTTATAAAGCGACAATCGTTAAGACAACTCATTATTGATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACt < 2:3915844/91‑1 (MQ=255) gTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAagcacagtataattttct > 1:2584554‑M1/1‑73 (MQ=255) gTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAAGCCCCGAAGCACAGAAAATTATACt < 2:2976843/91‑1 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctg < 2:2685636‑M1/91‑20 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctg < 1:534328‑M1/91‑20 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtg < 1:371639/91‑1 (MQ=255) ttATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACtg > 2:3510488/1‑91 (MQ=255) gttcttcctttgttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACtg > 1:3585184‑M1/66‑91 (MQ=255) ataAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtg < 1:85671‑M1/91‑22 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGa > 2:1122519/1‑91 (MQ=255) taAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGa < 1:987064/91‑1 (MQ=255) ccttttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTc > 2:1310314‑M1/60‑91 (MQ=255) cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAgtcacagtataattttctgtgcttcgg < 2:1010029‑M1/91‑28 (MQ=255) cGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgg < 2:715759‑M2/91‑5 (MQ=255) gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg < 2:1058329‑M2/91‑6 (MQ=255) gACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggg > 2:3049325‑M2/1‑86 (MQ=255) ttttagagtatatgtccaagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCgggg > 1:902853‑M1/56‑91 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga < 2:1092288‑M2/91‑8 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga > 1:3941412‑M2/1‑84 (MQ=255) cAATCGTTAAGACAACTCATTATTAATGATACAAAAGAAAAATAAACGAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcgggga > 2:3050633‑M2/1‑84 (MQ=255) aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt > 1:456815/1‑91 (MQ=255) tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGCAGCACAGAAAATTATACTGTGACTCGGGGAAtt > 1:3241359/1‑91 (MQ=255) tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt > 2:2775238/1‑91 (MQ=255) ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt < 2:629044/91‑1 (MQ=255) tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa > 2:2098250/1‑91 (MQ=255) tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa > 2:164956/1‑91 (MQ=255) aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTAt > 2:2494647/1‑91 (MQ=255) gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc < 1:1450947/91‑1 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta > 1:850250/1‑91 (MQ=255) aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta > 2:1182982/1‑91 (MQ=255) caagcatgttttctacagtcatctataatgcataaaaatTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat > 1:27942‑M1/40‑91 (MQ=255) cATTAATAATGATACAAAAAAAAAATAAACAAAGTAATCCCCGAAGCACAAAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAg < 2:567110/91‑1 (MQ=255) attattAATGATACAAAATAAAAATAAACAAAGTAATCCCAGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGa > 2:854421/1‑91 (MQ=255) ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt > 2:1615475/1‑91 (MQ=255) ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt < 2:417210/91‑1 (MQ=255) ttaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGAc < 1:3204402/91‑1 (MQ=255) aTGATACAAAATAAAAATAAACATAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt < 1:549579/91‑1 (MQ=255) aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt < 1:3517348/91‑1 (MQ=255) tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa > 1:2164826/1‑91 (MQ=255) tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa > 2:2010645/1‑91 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 1:1035396/91‑1 (MQ=255) aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa < 2:2263354/91‑1 (MQ=255) tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa < 1:388026/91‑1 (MQ=255) aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa > 1:2753565/1‑91 (MQ=255) aaaataaaaataAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc > 2:3758117/1‑91 (MQ=255) aaaataaaaataAACAAAGGAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAAc < 2:3128878/91‑1 (MQ=255) aaataaaaataaACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACa < 2:932884/91‑1 (MQ=255) taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc < 2:1142071/91‑1 (MQ=255) ataaaCACAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGa < 2:3848965/91‑1 (MQ=255) aaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACat > 2:3320208/1‑91 (MQ=255) aCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtct < 1:1103022‑M2/91‑53 (MQ=255) aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc > 1:1890224/1‑91 (MQ=255) aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc < 2:1363108/91‑1 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGANTGTAGAAAACATGCTTGGACATATAct < 1:3302581/91‑1 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 1:262126/1‑91 (MQ=255) aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct > 1:2963393/1‑91 (MQ=255) gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc < 1:582890/91‑1 (MQ=255) aaTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTa < 1:130227/91‑1 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:1581237/1‑91 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa < 1:420831/91‑1 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:1734542/1‑91 (MQ=255) aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa > 1:2011266/1‑91 (MQ=255) tCCCCGAgtcacagtataattttctgtgcttcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg < 2:779953‑M1/91‑85 (MQ=255) tCCCCGAgtcacagtataattttctgtgcttcggggattacttcgtttatttttattttgtatcattaataatgagttgtcttaacgattg > 2:3050474‑M1/1‑7 (MQ=255) tCCCCGAAGCACAGAAAATTATACTGTGACtcggggattactttgtttatttttattttgtatcattaataatgagttgtcttaacgattg < 2:3077393‑M2/91‑62 (MQ=255) tCCCCGAACCACAGAAAATTACACTGTGACTCGGGGAATTCTTACGCACTATAGCTGACTGTCGACAACCTGCTTGGACATATACTCTaaa > 2:2190755/1‑91 (MQ=255) | TTAAAAGATGGCAAAGCACGTGAAGTTATAAAGCGACAATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAA > USA300TCH1516_ALE/1438928‑1439108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |