BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1439018 =	188 (0.920)	21 (0.110)	12/146	NT	11.0%	intergenic (+16/+224)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein
*	?	USA300TCH1516_ALE	1439055 =	170 (0.920)	21 (0.110)	12/146	NT	11.0%	intergenic (+53/+187)	lysA/USA300HOU_RS07135	Diaminopimelate decarboxylase/hypothetical protein

Only 100 of 253 total aligned reads displayed.

ATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATTT  >  USA300TCH1516_ALE/1438966‑1439145

aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                           >  1:3392218/1‑91 (MQ=255)

aTCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAt                                                                                           <  1:1858677/91‑1 (MQ=255)

 tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGCAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                          >  1:3241359/1‑91 (MQ=255)

 tCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtt                                                                                          >  2:2775238/1‑91 (MQ=255)

   gTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAtttt                                                                                        <  2:3851936/91‑1 (MQ=255)

    ttAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAAttttt                                                                                       <  2:629044/91‑1 (MQ=255)

     tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                                                      >  2:2098250/1‑91 (MQ=255)

     tAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTa                                                                                      >  2:164956/1‑91 (MQ=255)

      aaGACAACTCATTATTAATGATACAAAATAAAAATAAACAAGGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGCAATTTTTAt                                                                                     >  1:3778958/1‑91 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   >  1:1533312/1‑91 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   >  1:559008/1‑91 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   <  1:3403395/91‑1 (MQ=255)

        gACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGc                                                                                   <  1:994676/91‑1 (MQ=255)

         aCAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCa                                                                                  >  2:1136672/1‑91 (MQ=255)

           aaCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCAtt                                                                                >  2:2685935/1‑91 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGGAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               <  2:3834795/91‑1 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  2:1182982/1‑91 (MQ=255)

            aCTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATta                                                                               >  1:850317/1‑91 (MQ=255)

             cTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtat                                                                              >  1:2737243/1‑91 (MQ=255)

              tCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATtata                                                                             >  2:714270/1‑91 (MQ=255)

                 ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt                                                                          >  2:1615475/1‑91 (MQ=255)

                 ttattaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGAt                                                                          >  1:2154061/1‑91 (MQ=255)

                   attaATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGa                                                                        >  2:3789416/1‑91 (MQ=255)

                     taATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACt                                                                      >  1:541447/1‑91 (MQ=255)

                     taATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACt                                                                      >  2:866657/1‑91 (MQ=255)

                       aTGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGt                                                                    >  1:3571709/1‑91 (MQ=255)

                        tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa                                                                   >  2:2010645/1‑91 (MQ=255)

                        tGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTa                                                                   >  1:2164915/1‑91 (MQ=255)

                          aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa                                                                 <  2:2263354/91‑1 (MQ=255)

                          aTACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGa                                                                 <  1:1035396/91‑1 (MQ=255)

                           tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                                <  1:388026/91‑1 (MQ=255)

                           tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                                <  1:2029678/91‑1 (MQ=255)

                           tACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaa                                                                <  2:3397596/91‑1 (MQ=255)

                            aCAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGaaa                                                               >  1:880011/1‑91 (MQ=255)

                                aataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACAt                                                           >  2:3757208/1‑91 (MQ=255)

                                 ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                          <  1:499799/91‑1 (MQ=255)

                                 ataaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATg                                                          <  1:1119976/91‑1 (MQ=255)

                                  taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                                                         <  2:1142382/91‑1 (MQ=255)

                                  taaaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGc                                                         >  1:2454680/1‑91 (MQ=255)

                                    aaaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCtt                                                       <  2:472819/91‑1 (MQ=255)

                                     ataatgcataaaaattccccgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                                      >  1:27942‑M2/53‑91 (MQ=255)

                                     aaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                                      <  2:441947/91‑1 (MQ=255)

                                     aaataaaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTg                                                      >  1:2549951/1‑91 (MQ=255)

                                          aaCAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACat                                                 >  2:3320208/1‑91 (MQ=255)

                                              aaGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAc                                             <  2:1363108/91‑1 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGANTGTAGAAAACATGCTTGGACATATAct                                            <  1:3302581/91‑1 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  2:1376628/1‑91 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  2:2590211/1‑91 (MQ=255)

                                               aGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATAct                                            >  1:2963393/1‑91 (MQ=255)

                                                gTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATActc                                           <  1:582890/91‑1 (MQ=255)

                                                  aaTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTa                                         <  1:130227/91‑1 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        <  1:420831/91‑1 (MQ=255)

                                                   aTCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaa                                        >  1:2011266/1‑91 (MQ=255)

                                                    tCCCCGAACCACAGAAAATTACACTGTGACTCGGGGAATTCTTACGCACTATAGCTGACTGTCGACAACCTGCTTGGACATATACTCTaaa                                       >  2:2190755/1‑91 (MQ=255)

                                                     CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      >  2:153515‑M1/1‑91 (MQ=255)

                                                     CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      >  1:933198‑M1/1‑91 (MQ=255)

                                                     CCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaa                                      >  1:2827870‑M1/1‑91 (MQ=255)

                                                      cccgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     >  1:2515547‑M2/36‑91 (MQ=255)

                                                      cccgagtcacagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     >  1:691036‑M2/36‑91 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     >  2:2831868‑M1/1‑91 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     <  1:1059160‑M1/91‑1 (MQ=255)

                                                      CCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaa                                     <  1:313232‑M1/91‑1 (MQ=255)

                                                       CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa                                    <  1:3758818‑M1/91‑1 (MQ=255)

                                                       CCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTaaaaaa                                    <  2:1682333‑M1/91‑1 (MQ=255)

                                                            gCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGgaag                               >  1:3223146/1‑91 (MQ=255)

                                                               cagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAACAAAGGAAGAAc                            >  1:3585184‑M2/27‑91 (MQ=255)

                                                               cagtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                            >  1:3805671‑M2/27‑91 (MQ=255)

                                                               caGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAAc                            >  1:3946571/1‑91 (MQ=255)

                                                                agtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                           >  1:3727898‑M2/26‑91 (MQ=255)

                                                                agtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                           >  2:3317616‑M2/26‑91 (MQ=255)

                                                                aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                           >  2:2483554/1‑91 (MQ=255)

                                                                aGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACa                           >  1:2624952/1‑91 (MQ=255)

                                                                 gtataattttctgtgcttcggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                          >  1:786206‑M2/25‑91 (MQ=255)

                                                                 gAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                          >  1:1643094/1‑91 (MQ=255)

                                                                 gAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                          >  1:1432299/1‑91 (MQ=255)

                                                                 gAAAATTATACTGTGACTCGGGGAATTTCTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAg                          >  1:3457259/1‑91 (MQ=255)

                                                                  aaaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGc                         <  2:1487320/91‑1 (MQ=255)

                                                                  aaaaTCATACTGTGACTCGGGGAATATTTATGCATTATACATGACTGTAGAAAGCATGCTTGGACATATACTCTAAAAAAGGAAGAACAGc                         <  1:3677310/91‑1 (MQ=255)

                                                                   aaaTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGca                        <  1:1701286/91‑1 (MQ=255)

                                                                     aTTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGcaca                      >  2:3098125/1‑91 (MQ=255)

                                                                      ttATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAt                     >  1:3066169/1‑91 (MQ=255)

                                                                       tataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtt                    >  1:2771098/1‑91 (MQ=255)

                                                                       tataCTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtt                    >  1:1892876/1‑91 (MQ=255)

                                                                        ataCTGTGACTCGGGGCCTTTTTCTGCATTATAGATGACTGTAGAAAACATGCTTGGACCTATACTCTAACCAAGGAAGAACAGCACAttt                   >  2:177468/1‑91 (MQ=255)

                                                                           cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACAtttttt                >  2:1907478/1‑90 (MQ=255)

                                                                           cTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTtta                >  2:937370/1‑91 (MQ=255)

                                                                             gtgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagt              >  1:2257366/1‑91 (MQ=255)

                                                                              tgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtt             >  2:2424439/1‑91 (MQ=255)

                                                                              tgACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACAAAAAAAAAGGAAGAACAGCACATTTttagtt             <  2:3647051/91‑1 (MQ=255)

                                                                               gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta            >  1:2390998/1‑91 (MQ=255)

                                                                               gACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTttagtta            <  2:352078/91‑1 (MQ=255)

                                                                                    ggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAg       >  1:2658935‑M2/6‑91 (MQ=255)

                                                                                    ggggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAg       <  1:1092288‑M2/86‑1 (MQ=255)

                                                                                     gggaATTTTTATGCATTATAGATGACTGTAGATAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGt      <  2:313503‑M2/87‑1 (MQ=255)

                                                                                     gggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGt      >  2:3123851‑M2/5‑91 (MQ=255)

                                                                                      ggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTa     >  2:1097148‑M2/4‑91 (MQ=255)

                                                                                      ggaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTa     >  1:1785492‑M2/4‑91 (MQ=255)

                                                                                       gaATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAt    >  1:2870529‑M2/3‑91 (MQ=255)

                                                                                       gaATTGTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAt    <  2:3202550‑M2/89‑1 (MQ=255)

                                                                                        aATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTAtt   <  2:925059‑M2/90‑1 (MQ=255)

ATCGTTAAGACAACTCATTATTAATGATACAAAATAAAAATAAACAAAGTAATCCCCGAAGCACAGAAAATTATACTGTGACTCGGGGAATTTTTATGCATTATAGATGACTGTAGAAAACATGCTTGGACATATACTCTAAAAAAGGAAGAACAGCACATTTTTAGTTAGAAAGTATTT  >  USA300TCH1516_ALE/1438966‑1439145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.