| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1443204 = | 222 (1.090) | 31 (0.250) +CAACGAGCTGTACATTATAAAATACATATC |
10/100 | NT | 18.4% | coding (224/393 nt) | USA300TCH1516_01342 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1803072 = | NA (NA) | coding (796/807 nt) | USA300HOU_RS12765 | hypothetical protein | |||||
AGATATAGTTTTAAACGTGACTTCAAGCTATATGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1443241‑1443204‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGC > USA300TCH1516_ALE/1803072‑1803111 |||||||||||||||||||||||||||||| AGATATGGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATT < 2:2818960/91‑1 tgGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTG < 2:1915930/89‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:1470673/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:3132044/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:3131967/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 1:1625018/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 1:1625276/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:1470547/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:209761/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGA < 2:1470840/90‑1 gGTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATAAAAAAAAAGCTGATTTCTATTAATTATTTGA < 2:208606/90‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:2744846/91‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:446228/91‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:2846721/91‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:2744872/91‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:2655465/91‑1 GTTTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGAT < 1:2038455/91‑1 TTTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAG < 1:460583/91‑1 TTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 1:1179459/91‑1 TTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 2:622074/91‑1 TTAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGA < 2:1201871/91‑1 TAAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAA < 1:3159809/91‑1 AAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:2111973/91‑1 AAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:11891/91‑1 AAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:11800/91‑1 AAACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAA < 1:1059356/91‑1 AACGTGACTTCAAGCTATATGAATGCAACTAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:627878/91‑1 AACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTGATTATTTGATAGAAAT < 2:2764807/91‑1 AACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:1088168/91‑1 AACGTGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAAT < 2:86942/91‑1 gGACTTCAAGCTATATGAATGCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGC < 1:173562/90‑1 |||||||||||||||||||||||||||||| AGATATAGTTTTAAACGTGACTTCAAGCTATATGAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1443241‑1443204‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAAAAAGCTGATTTCTATTAATTATTTGATAGAAATCAGC > USA300TCH1516_ALE/1803072‑1803111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |