| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456948 = | 224 (1.100) | 43 (0.230) +GTTTT |
13/150 | NT | 18.5% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918540 | 180 (0.880) | intergenic (‑258/+240) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
AACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1456992‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT < USA300TCH1516_ALE/1918540‑1918451 ||||| AACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAA > 2:1216152/1‑91 AAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGT > 1:1110149/1‑91 AAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCATTTGTTTTCTGTAAAAAGAAATCCATACGCTATGCGTATGGTTCAGAAAAGGT > 1:3158567/1‑91 AAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTT > 1:3314909/1‑91 AAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTT > 1:51084/1‑91 AAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTT > 2:194714/1‑91 AGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAC > 2:725520/1‑91 AGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAC > 1:3219205/1‑91 AGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAC > 2:1337286/1‑91 AGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTAC > 2:1809353/1‑91 gcAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACC > 2:3632751/3‑91 GTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACC > 1:176132/1‑91 AACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAACGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATT > 2:1013354/1‑91 AACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTCTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATT > 2:3761902/1‑91 ACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTTAGAAAAGGTTCTACCATTG > 1:1877406/1‑91 ACCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTG > 2:3311346/1‑91 CCTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGT > 2:2533781/1‑91 CTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGACAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTC > 2:697732/1‑91 CTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTC > 2:131572/1‑91 CTAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTC > 1:1295512/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:1116053/1‑91 TAAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCA > 1:3948066/1‑91 AAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC > 2:2137299/1‑91 AAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCAC > 1:1708179/1‑91 AAAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTAAGAAAAGGTTCTACTATTGTCAa > 2:1274879/1‑90 AAGTGTCGTAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACA > 2:3271935/1‑91 TAAGGGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGC > 2:767564/1‑91 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCT > 1:3709449/1‑91 GGTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCT < 1:224025/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC < 2:862074/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC < 2:2934344/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC < 2:2475969/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC < 1:1691582/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC > 1:1651283/1‑91 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTC < 1:799357/91‑1 GTTTACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTATAAAAAAAAAAAAAAAAATGCATCTC < 2:2933095/91‑1 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACG < 1:1770059/91‑1 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACG < 1:1770070/91‑1 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACG > 1:1171061/1‑91 ACTGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACG > 2:726415/1‑91 CTGCTTGTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGT < 2:697914/91‑1 TGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCGCAAAAAATGCATCTCTACGTG > 2:3132503/1‑91 TGCTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTG < 2:3107178/91‑1 CTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCT < 2:2987464/91‑1 CTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCT < 1:2256986/91‑1 CTTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCT < 1:2837817/91‑1 TTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA > 1:3218804/1‑91 TTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA > 1:547200/1‑91 TTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA > 1:551632/1‑91 TTTTGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTA > 1:703339/1‑91 TGTTTTTTGTAAAAAGATAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAA < 1:3381099/91‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAA < 2:3376505/91‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAA > 1:3643372/1‑91 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAA < 1:2629134/91‑1 TGTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATCGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAA > 1:3328472/1‑91 GTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAAT < 2:3543803/91‑1 GTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAAT < 2:3544042/91‑1 GTTTTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAAT < 2:3154073/91‑1 TTTTTTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAA > 2:1788605/1‑91 TTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAA < 2:47458/91‑1 TTTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAA < 2:3066918/91‑1 TTTTGTAAAAAGAAAACCATACGCTATGCGTATAGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAA < 2:47441/91‑1 TTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACGATTGTCACAAAAAATGCATCTATACGTGCTAGAATAAAT > 2:131490/1‑91 TTTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT > 1:181500/1‑91 ||||| AACAAAAGCAGTAAACCTAAAGTGTCGTAAGGGTTTACTGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1456992‑1456948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGTAAAAAGAAAACCATACGCTATGCGTATGGTTCAGAAAAGGTTCTACCATTGTCACAAAAAATGCATCTCTACGTGCTAGAATAAAT < USA300TCH1516_ALE/1918540‑1918451 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |