| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1456948 = | 224 (1.100) | 43 (0.230) +GTTTT |
13/150 | NT | 18.5% | intergenic (‑62/‑182) | USA300HOU_RS07230/USA300HOU_RS07235 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 1918540 | 180 (0.880) | intergenic (‑258/+240) | USA300HOU_RS07235/USA300HOU_RS09510 | hypothetical protein/hypothetical protein | |||||
Only 100 of 264 total aligned reads displayed.
ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT > USA300TCH1516_ALE/1918451‑1918630 | atttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAt < 2:1546428/91‑1 (MQ=31)atttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAa > 1:181500‑M2/1‑90 (MQ=255) tttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaa < 2:47458‑M2/91‑3 (MQ=255) ttattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTa < 1:2012964/91‑1 (MQ=33) tattCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTaa < 1:1045846/91‑1 (MQ=34) attCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaac < 2:3543803‑M2/91‑6 (MQ=255) attCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaac < 2:3154073‑M2/91‑6 (MQ=255) attCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTaaa < 2:884192/91‑1 (MQ=35) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACGATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaaca > 1:3328472‑M2/1‑85 (MQ=255) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaaca < 2:3376505‑M2/91‑7 (MQ=255) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaaca < 1:2629134‑M2/91‑7 (MQ=255) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAag > 2:895981/1‑91 (MQ=37) ttCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTATCTTTTTACAAaaaaca < 1:3381099‑M2/91‑7 (MQ=255) ttCTAGCACGTAGAGACGCATTTTTTGTGACAATGGTAGAACCGTTTCTGAACCATACGCATC‑GCGTATGGTTTTCTTTTTACAATTAAag > 2:2799508/1‑91 (MQ=11) tAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaa > 1:703339‑M2/1‑82 (MQ=255) tAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaa > 1:547200‑M2/1‑82 (MQ=255) tAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGc < 2:2123689/91‑1 (MQ=40) aGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGcc < 2:282505/91‑1 (MQ=255) gCACGTAGAGATGCATTTTTTTTTATTATTGTAGAACCCTTTCTGAACCATACGAATC‑GCGTATGGTTTTCTTTTTAGCATTATAGAGccc > 2:1482901/1‑90 (MQ=2) gCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCa > 1:2954492/1‑91 (MQ=255) cACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagca < 2:3107178‑M2/91‑13 (MQ=255) cACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCaa < 2:1281218/91‑1 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagt < 1:1770059‑M2/91‑15 (MQ=255) cGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAAcc < 2:303610/91‑1 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac < 2:2934344‑M2/91‑19 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac < 2:2475969‑M2/91‑19 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac < 1:799357‑M2/91‑19 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaac > 1:1651283‑M2/1‑73 (MQ=255) gagaTGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCgttg > 2:1784558/1‑91 (MQ=255) gagaTGCATCTTTTGTGACAATGGTAGACCGTTTTCTGAACCATACGCATC‑GCGTCTGGGTTTCTTTTTACACTTAAAGCGCCAACCgggg > 2:960776/1‑88 (MQ=14) gCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaaccctta > 2:767564‑M2/1‑68 (MQ=255) cATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAg > 1:2994500/1‑91 (MQ=255) aTTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGt < 2:3636473/91‑1 (MQ=255) aTTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGt < 1:461656/91‑1 (MQ=255) tttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTaa < 2:2322660/91‑1 (MQ=255) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAAc > 1:1484831/1‑91 (MQ=255) ttGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAAc < 2:1053199/91‑1 (MQ=17) gtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacacttt > 1:1708179‑M2/1‑59 (MQ=255) gtgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACaa > 2:3308490/1‑91 (MQ=255) tgACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACaac < 1:1565395/91‑2 (MQ=17) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttag > 2:131572‑M2/1‑57 (MQ=255) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttag > 1:1295512‑M2/1‑57 (MQ=255) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATg > 1:3855763/1‑91 (MQ=255) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATg > 1:1375697/1‑91 (MQ=255) gACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTGTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttag > 2:697732‑M2/1‑57 (MQ=255) gcAAGGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCATTGTTAGACTATAACAACgg < 2:1882578/90‑1 (MQ=17) aCAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATgg > 1:3640167/1‑91 (MQ=255) aCAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATgg > 1:2526214/1‑91 (MQ=255) aCAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATgg < 2:3732112/91‑1 (MQ=255) cAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGt < 1:2205242/91‑1 (MQ=255) cAATGGTAGAACCTTTTCTAAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggt > 1:1877406‑M2/1‑55 (MQ=255) aaTGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCGTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggtt > 2:1013354‑M2/1‑54 (MQ=255) gTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGct < 1:1926663/91‑1 (MQ=255) tAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTACAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctc > 2:3201718/1‑91 (MQ=255) tAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAACGGTTGGctc > 1:3782014/1‑91 (MQ=255) aGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcc > 2:1705827/1‑91 (MQ=255) aGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcc < 1:3213886/91‑1 (MQ=255) aGAACCTCTTCTGAACCATACGCATC‑GCGTATGGTTTTCTTTTTACCATTAAAGAGCCAACCGTTGATATAGTCTAACACTGGTTGGcccc > 2:3685935/1‑91 (MQ=21) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct < 2:712649/91‑1 (MQ=255) gAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcct > 1:2473511/1‑91 (MQ=255) aaCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggtttactgctt > 1:3314909‑M2/1‑46 (MQ=255) aaCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggtttactgctt > 1:51084‑M2/1‑46 (MQ=255) aaCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc < 1:1011939/91‑1 (MQ=255) aaCCTTTTCCGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGctcctc < 1:628058/91‑1 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAAaaaacaaaagcagtaaacccttacgacactttaggtttactgcttt > 1:1110149‑M2/1‑45 (MQ=255) aCCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCctct < 2:2664522/91‑1 (MQ=255) ccTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCtt < 2:151609/91‑1 (MQ=255) cTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTa < 1:1466416/91‑1 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTCTAGTCTAACAATGGTTGGCTCCCCTTATTTTa > 2:799474/1‑91 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa > 1:2391342/1‑91 (MQ=255) cTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTa > 1:2934490/1‑91 (MQ=255) aaCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt < 1:871322/91‑1 (MQ=255) aaCCATACGC‑TATGCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgt > 1:2622678/1‑91 (MQ=39) aCCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTAtgtg > 1:3180225/1‑91 (MQ=255) ccATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGc > 1:2431178/1‑91 (MQ=255) ccATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGCTATAGTCTAAAAATGGTTGGCTCCTCTTATTTTATGTGc > 2:1935113/1‑91 (MQ=255) cATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCt > 1:1088147/1‑91 (MQ=255) aTACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTa < 1:3437687/91‑1 (MQ=255) tatgCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaa < 2:1620968/88‑1 (MQ=255) cGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaaa < 1:2851806/91‑1 (MQ=255) cGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTaaaa > 1:940694/1‑91 (MQ=255) cATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTCTAGTCTCACAATGGTTGGCTCCTCTTATGTTATGTGCTAAAAAt > 2:3909090/1‑91 (MQ=255) ctatgCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTCTTTTATGTGCTAAAAAt > 2:3079153/5‑91 (MQ=255) aTA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt < 1:1136874/91‑1 (MQ=255) aTA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAAtt < 2:397654/91‑1 (MQ=255) a‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTta < 1:2778933/91‑1 (MQ=255) gCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTtat < 1:648496/91‑1 (MQ=255) gTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAACAATTTATAg > 2:3811719/1‑91 (MQ=255) gTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAg > 2:2015942/1‑91 (MQ=255) tATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAgg < 1:2700215/91‑1 (MQ=255) tGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCa > 1:1945774/1‑91 (MQ=255) ttttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtt > 1:2329890/1‑91 (MQ=255) ttCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAAtttt < 1:3113239/91‑1 (MQ=255) cTTTTTACAATTAATTAGCCAAGCGTTGTTATAGTCTACCAATGGTTGTCTTCTCTTATTTTATGTGCTATAAATTTATAGGGAAATctat < 2:3187348/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat < 2:1756472/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttat < 1:2247924/91‑1 (MQ=255) cTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTgtat > 2:2233321/1‑91 (MQ=255) ttttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTttatta < 2:746635/91‑1 (MQ=255) ttACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTaca > 1:3754370/1‑91 (MQ=255) aCAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTacaac < 2:1532026/91‑1 (MQ=255) | ATTTATTCTAGCACGTAGAGATGCATTTTTTGTGACAATGGTAGAACCTTTTCTGAACCATACGCATA‑GCGTATGGTTTTCTTTTTACAATTAAAGAGCCAACCGTTGTTATAGTCTAACAATGGTTGGCTCCTCTTATTTTATGTGCTAAAAATTTATAGGCAATTTTATTACAACAAT > USA300TCH1516_ALE/1918451‑1918630 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |