| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1494261 | 164 (0.810) | 8 (0.040) | 5/150 | NT | 5.4% | coding (7763/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh |
| ? | USA300TCH1516_ALE | = 1494291 | 124 (0.650) | coding (7733/31266 nt) | ebh_1 | Extracellular matrix‑binding protein ebh | |||||
GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494167‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTA < USA300TCH1516_ALE/1494291‑1494203 GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTA < 1:2127151/91‑1 TCACAGATCTTTGTAAGTTATTTTTAGACGTTACTAGTTGGCTATTATCTTCTTTATTTTGAAGTAACGCTTTAGCTTGATCAATCTTAGT < 2:3572779/91‑1 TCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGT > 2:2780537/1‑91 CACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTT > 2:3127592/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTACTGCTTTAGCTTGATCAATCTTCGTTT > 2:3786388/1‑91 ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT > 2:89293/1‑91 AGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACTAAAGTTCGT < 2:1564676/91‑1 ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCAC < 2:2109734/91‑1 ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCAC < 1:2403673/91‑1 ACTAATTGGCTATGATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCAC < 1:3949563/91‑1 CTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACA < 1:2886154/91‑1 CTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACA < 1:2418148/91‑1 GCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAG < 1:2309180/91‑1 TATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAA < 1:3127887/91‑1 AGTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAA > 1:49421/1‑91 GTTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAAT < 2:1401727/91‑1 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT > 1:3280344/1‑91 TTTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATT > 1:3329484/1‑91 TTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTA > 2:127663/1‑91 TTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTA < 2:3276223/91‑1 TTCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTA > 1:175186/1‑91 GTTCACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1494167‑1494261‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtttCTGACGCACTAACTAAAGTTCGTGCAGCACAAACTAAGATTGATCAAGCTAAAGCATTACTTCAAAATAAAGAAGATAATAGCCAATTA < USA300TCH1516_ALE/1494291‑1494203 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |