BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1494261	164 (0.810)	8 (0.040)	5/150	NT	5.4%	coding (7763/31266 nt)	ebh_1	Extracellular matrix‑binding protein ebh
*	?	USA300TCH1516_ALE	= 1494291	124 (0.650)	8 (0.040)	5/150	NT	5.4%	coding (7733/31266 nt)	ebh_1	Extracellular matrix‑binding protein ebh

Only 100 of 214 total aligned reads displayed.

ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAG  >  USA300TCH1516_ALE/1494171‑1494351

acaGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTACTGCTTTAGCTTGATCAATCTTCGTTT                                                                                            >  2:3786388‑M1/1‑91 (MQ=255)

  aGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTtgt                                                                                          >  2:3019385/1‑91 (MQ=255)

  aGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTtgt                                                                                          >  2:1392301/1‑91 (MQ=255)

   gatcTTTGTAAGTTATTTTTAGACGTTACTGATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTtgtg                                                                                         <  2:414782/88‑1 (MQ=255)

   gAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTtgtg                                                                                         <  1:1143341/91‑1 (MQ=255)

   gAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTtgtg                                                                                         <  1:3620144/91‑1 (MQ=255)

    aaCTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGtgc                                                                                        >  2:2291943/1‑91 (MQ=255)

    aaCTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGtgc                                                                                        >  1:814772/1‑91 (MQ=255)

    aaCTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGtgc                                                                                        <  2:3126513/91‑1 (MQ=255)

      cTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGtgctg                                                                                      <  1:2578975/91‑1 (MQ=255)

        ttGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCa                                                                                    <  2:1100146/91‑1 (MQ=255)

          gTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACg                                                                                  >  1:2894121/1‑91 (MQ=255)

          gTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACg                                                                                  <  1:2352638/91‑1 (MQ=255)

            aaGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGaa                                                                                <  1:629995/91‑1 (MQ=255)

             aGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAAc                                                                               >  2:3521772/1‑91 (MQ=255)

             aGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAAc                                                                               >  2:3548305/1‑91 (MQ=255)

               ttATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACta                                                                             <  1:1450368/91‑2 (MQ=255)

               ttATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACta                                                                             <  1:572714/91‑2 (MQ=255)

               ttATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACtt                                                                             <  1:2967914/91‑1 (MQ=255)

                tATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACttt                                                                            <  2:3057520/91‑1 (MQ=255)

                tATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACttt                                                                            >  2:1557552/1‑91 (MQ=255)

                 aTTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACtaaa                                                                           <  2:2646365/91‑4 (MQ=255)

                 aTTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACtaaa                                                                           <  2:537299/91‑4 (MQ=255)

                  tttttAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACtaaag                                                                          <  2:668210/91‑5 (MQ=255)

                  tttttAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTttag                                                                          <  1:471715/91‑1 (MQ=255)

                  tttttAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTttag                                                                          >  2:3596911/1‑91 (MQ=255)

                  tttttAGACGTTACTAATTGGCTATTATCTTCTGTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACTAACtaaag                                                                          <  1:3515583/91‑5 (MQ=255)

                   ttttAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTttagt                                                                         >  2:3554206/1‑91 (MQ=255)

                    tttAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTttagtt                                                                        <  1:271247/91‑1 (MQ=255)

                      tAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTttagttag                                                                      <  2:711244/91‑1 (MQ=255)

                        gACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTg                                                                    <  2:865334/91‑1 (MQ=255)

                        gACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTg                                                                    <  1:2655832/91‑1 (MQ=255)

                        gACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTg                                                                    <  2:3899992/91‑1 (MQ=255)

                        gACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTg                                                                    >  2:3498560/1‑91 (MQ=255)

                         aCGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGc                                                                   <  1:1301206/91‑1 (MQ=255)

                          cGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCg                                                                  >  1:1603298/1‑91 (MQ=255)

                           gTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGt                                                                 <  2:1703066/91‑1 (MQ=255)

                           gTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGt                                                                 <  1:3106731/91‑1 (MQ=255)

                           gTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGt                                                                 <  1:2949285/91‑1 (MQ=255)

                             tACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGGTTGATCAAGCTTTGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCa                                                               <  1:3149601/91‑1 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTctgacgcactaactaaagttcgtgcagcac                                                              <  2:2109734‑M1/91‑31 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTctgacgcactaactaaagttcgtgcagcac                                                              <  1:2403673‑M1/91‑31 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                              <  1:2551879/91‑1 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                              >  2:403783/1‑91 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                              <  1:954698/91‑1 (MQ=255)

                              aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                              <  1:1573857/91‑1 (MQ=255)

                               cTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTctgacgcactaactaaagttcgtgcagcaca                                                             <  1:2886154‑M1/91‑32 (MQ=255)

                                tAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaa                                                            >  1:175186‑M2/1‑89 (MQ=255)

                                tAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaa                                                            >  2:127663‑M2/1‑89 (MQ=255)

                                  aTTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaaac                                                          <  2:1401727‑M2/91‑5 (MQ=255)

                                    tGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACtt                                                        >  1:1731376/1‑91 (MQ=255)

                                     ggCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttg                                                       <  2:506442/91‑1 (MQ=255)

                                     ggCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACCTTAGTTAGTGCGTCAGAAACttg                                                       >  1:1178076/1‑91 (MQ=255)

                                       cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                     >  1:859336/1‑91 (MQ=255)

                                       cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                     <  1:1912289/91‑1 (MQ=255)

                                       cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                     >  2:2669898/1‑91 (MQ=255)

                                        tattatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgttg                                                    >  2:1769115/1‑91 (MQ=255)

                                        tattatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgttg                                                    >  1:2873450/1‑91 (MQ=255)

                                        tattatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgttg                                                    <  1:106540/91‑1 (MQ=255)

                                         attatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTtgttgt                                                   >  1:1024705/1‑91 (MQ=255)

                                          ttatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTtgtg                                                  >  2:3127959/1‑91 (MQ=255)

                                            atCTTCTTTATTTTGAGGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTgtggt                                                <  2:1191050/91‑1 (MQ=255)

                                                 cttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGc                                           <  1:3857597/91‑1 (MQ=255)

                                                   ttATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCAc                                         <  1:87777/91‑1 (MQ=255)

                                                    ttttttTATGTAATGCTTGAGCTTGATCAAAGTTAGTTTGTGCTGCACGAAATTTAGTTATTGCGTCTGAAACTTGTTGTGGTGTTGCACg                                        <  2:1022670/89‑1 (MQ=255)

                                                    tATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTctgacgcactaactaaagttcgtgcagcacaaactaagattgatcaagctaa                                        <  1:3127887‑M1/91‑53 (MQ=255)

                                                      ttttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCt                                      <  2:3345585/91‑1 (MQ=255)

                                                       tttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                     <  2:1897950/91‑1 (MQ=255)

                                                       tttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                     <  1:1656514/91‑1 (MQ=255)

                                                       ttaaaaGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                     <  1:2524663/87‑1 (MQ=255)

                                                        ttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCa                                    >  1:708369/1‑91 (MQ=255)

                                                        ttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCa                                    >  1:3827762/1‑91 (MQ=255)

                                                        ttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCa                                    <  2:2795940/91‑1 (MQ=255)

                                                          gAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCatt                                  >  1:2083298/1‑91 (MQ=255)

                                                            tgTAATGCTTTAGCTTGATGAATCTGAGTTTGTGCTGCACGAACTTTAGGTGGTGCGTCAGAATCTTGTTGTGGTGTTGCAGGCTCattat                                <  2:311259/90‑1 (MQ=255)

                                                            aGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCattat                                >  2:911200/1‑91 (MQ=255)

                                                              tAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCAttatta                              >  1:1480038/1‑91 (MQ=255)

                                                               aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                             >  1:2168022/1‑91 (MQ=255)

                                                               aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                             <  1:3178247/91‑1 (MQ=255)

                                                               aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGGTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATCATTaa                             <  2:1316591/91‑1 (MQ=255)

                                                               aaTGCCTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                             <  2:3638809/91‑1 (MQ=255)

                                                                aTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAAt                            <  2:2003542/91‑1 (MQ=255)

                                                                aTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAAt                            >  1:2259909/1‑91 (MQ=255)

                                                                 tGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATc                           >  1:2002142/1‑91 (MQ=255)

                                                                       aGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgt                     <  2:1647231/91‑1 (MQ=255)

                                                                         cTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgttg                   >  2:613872/1‑91 (MQ=255)

                                                                          ttGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTtgttgt                  >  1:3775487/1‑91 (MQ=255)

                                                                             aTCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCt               >  2:2479112/1‑91 (MQ=255)

                                                                             aTCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCt               <  2:1176637/91‑1 (MQ=255)

                                                                              tCATTCTCAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAATCTTGTTGTGGTGTTGCACGCTCATTATTATTCTCTTGTTGTGCtt              <  2:3504830/91‑1 (MQ=255)

                                                                              tCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCtt              <  1:338803/91‑1 (MQ=255)

                                                                                aaTCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCt            >  2:879200/1‑91 (MQ=255)

                                                                                   cTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagc         <  1:2309180‑M2/91‑54 (MQ=255)

                                                                                    ttAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGttt        <  2:2939532/91‑1 (MQ=255)

                                                                                      aGTTTctgacgcactaactaaagttcgtgcagcacaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaa      >  1:49421‑M1/1‑5 (MQ=255)

                                                                                        tttctgacgcactaactaaagttcgtgcagcacaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaatt    >  1:3329484‑M1/1‑3 (MQ=255)

                                                                                        tttGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGc    <  1:2293542/91‑1 (MQ=255)

                                                                                         ttGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCa   <  2:3203580/91‑1 (MQ=255)

                                                                                          tgtgCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaattag  <  1:2418148‑M2/91‑61 (MQ=255)

                                                                                          tgtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAg  <  2:840704/91‑1 (MQ=255)

ACAGAACTTTGTAAGTTATTTTTAGACGTTACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAG  >  USA300TCH1516_ALE/1494171‑1494351

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.