BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1494261	164 (0.810)	8 (0.040)	5/150	NT	5.4%	coding (7763/31266 nt)	ebh_1	Extracellular matrix‑binding protein ebh
*	?	USA300TCH1516_ALE	= 1494291	124 (0.650)	8 (0.040)	5/150	NT	5.4%	coding (7733/31266 nt)	ebh_1	Extracellular matrix‑binding protein ebh

Only 100 of 172 total aligned reads displayed.

ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTATGCATTG  >  USA300TCH1516_ALE/1494201‑1494381

aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                                                            <  1:2551858/91‑1 (MQ=255)

aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                                                            <  1:1573857/91‑1 (MQ=255)

aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAg                                                                                            <  1:954698/91‑1 (MQ=255)

aCTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGATGCACGAACTTTAGTTAGTGCGTCAg                                                                                            <  2:2238972/91‑1 (MQ=255)

  tAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaa                                                                                          <  2:3276223‑M2/91‑3 (MQ=255)

  tAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaa                                                                                          >  2:127663‑M2/1‑89 (MQ=255)

    aTTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaaac                                                                                        <  2:1401727‑M2/91‑5 (MQ=255)

      tGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACtt                                                                                      <  1:2884171/91‑1 (MQ=255)

      tGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACtt                                                                                      >  1:1731376/1‑91 (MQ=255)

       ggCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttg                                                                                     >  1:490170/1‑91 (MQ=255)

        gCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgt                                                                                    <  2:3384266/91‑1 (MQ=255)

         cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                                                   >  2:2669812/1‑91 (MQ=255)

         cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                                                   <  1:1912289/91‑1 (MQ=255)

         cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                                                   <  1:1911111/91‑1 (MQ=255)

         cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                                                   >  2:2669898/1‑91 (MQ=255)

         cTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgtt                                                                                   >  2:40804/1‑91 (MQ=255)

          tattatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgttg                                                                                  >  2:1768521/1‑91 (MQ=255)

          tattatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACttgttg                                                                                  <  1:106540/91‑1 (MQ=255)

           attatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTtgttgt                                                                                 >  1:1024705/1‑91 (MQ=255)

           attatCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTtgttgt                                                                                 >  1:2696740/1‑91 (MQ=255)

              atCTTCTTTATTTTGAGGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTgtggt                                                                              <  2:1191050/91‑1 (MQ=255)

               tcttctTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTgtggtg                                                                             >  2:701493/1‑91 (MQ=255)

                 ttcttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGtt                                                                           <  2:1887972/91‑1 (MQ=255)

                 ttcttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGtt                                                                           >  2:3144612/1‑91 (MQ=255)

                  tcttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTg                                                                          >  2:396079/1‑91 (MQ=255)

                   cttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGc                                                                         <  2:921322/91‑1 (MQ=255)

                   cttTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGc                                                                         <  1:3857597/91‑1 (MQ=255)

                     ttATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCAc                                                                       <  1:87693/91‑1 (MQ=255)

                      ttttttTATGTAATGCTTGAGCTTGATCAAAGTTAGTTTGTGCTGCACGAAATTTAGTTATTGCGTCTGAAACTTGTTGTGGTGTTGCACg                                                                      <  2:1022670/89‑1 (MQ=255)

                       aTTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTCTGCTGCACGACCTTTAGTTACCGCGTCAGAACCATGCTGTGGTGTTGCAccc                                                                     >  2:1130891/1‑89 (MQ=255)

                         tttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                                                   <  1:1656514/91‑1 (MQ=255)

                         tttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                                                   <  2:1897950/91‑1 (MQ=255)

                         ttaaaaGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTc                                                                   <  1:2524663/87‑1 (MQ=255)

                          ttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCa                                                                  >  1:708369/1‑91 (MQ=255)

                          ttGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCa                                                                  >  1:3827762/1‑91 (MQ=255)

                           tGAAGTAATGCATTAGCTTGATCTATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCat                                                                 <  2:3019702/91‑1 (MQ=255)

                           actaGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCat                                                                 >  1:1403938/4‑91 (MQ=255)

                                tAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCAttatta                                                            >  1:1480038/1‑91 (MQ=255)

                                 aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                                                           <  2:351465/91‑1 (MQ=255)

                                 aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                                                           <  1:3178247/91‑1 (MQ=255)

                                 aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                                                           >  1:2168022/1‑91 (MQ=255)

                                 aaTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGGTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATCATTaa                                                           <  2:1316591/91‑1 (MQ=255)

                                 aaTGCCTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTaa                                                           <  2:3638809/91‑1 (MQ=255)

                                  aTGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAAt                                                          <  2:2003542/91‑1 (MQ=255)

                                   tGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATc                                                         >  1:2083986/1‑91 (MQ=255)

                                   tGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATc                                                         >  1:2002142/1‑91 (MQ=255)

                                     cTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCAc                                                       >  2:3123543/1‑91 (MQ=255)

                                       ttAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaata                                                     <  1:3127887‑M2/91‑40 (MQ=255)

                                       ttAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACtt                                                     >  1:2349855/1‑91 (MQ=255)

                                         aGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgt                                                   <  2:1647231/91‑1 (MQ=255)

                                          gCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgtt                                                  >  1:3878532/1‑91 (MQ=255)

                                           cTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgttg                                                 >  2:613967/1‑91 (MQ=255)

                                           cTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACttgttg                                                 >  2:3535866/1‑91 (MQ=255)

                                            ttGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTtgttgt                                                >  1:3775487/1‑91 (MQ=255)

                                            ttGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTtgttgt                                                <  1:2263538/91‑1 (MQ=255)

                                             tGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTtgtg                                               <  2:525772/91‑1 (MQ=255)

                                                tCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCtt                                            <  1:338803/91‑1 (MQ=255)

                                                  aaTCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCt                                          >  2:879200/1‑91 (MQ=255)

                                                    tCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGt                                        >  1:2207025/1‑91 (MQ=255)

                                                     cTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagc                                       <  1:2309180‑M2/91‑54 (MQ=255)

                                                     cTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCGTTATTAATCACTTGTTGTGCTTCTGtt                                       <  2:556209/91‑1 (MQ=255)

                                                      ttAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGttt                                      <  2:2939532/91‑1 (MQ=255)

                                                          tttGTGCTGCACGAACTTGAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGc                                  <  2:118672/91‑1 (MQ=255)

                                                            tgtgCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaattag                                <  1:2886154‑M2/91‑61 (MQ=255)

                                                            tgtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAg                                <  2:840704/91‑1 (MQ=255)

                                                            tgtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAg                                <  1:845051/91‑1 (MQ=255)

                                                             gtgCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaattagt                               <  2:2109734‑M2/91‑62 (MQ=255)

                                                             gtgCTGCACGAACTTTAGTTAGTGCGTCAGaaactaagattgatcaagctaaagcattacttcaaaataaagaagataatagccaattagt                               <  1:2403673‑M2/91‑62 (MQ=255)

                                                             gtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGt                               <  1:2992901/91‑1 (MQ=255)

                                                             gtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGt                               >  2:3102635/1‑91 (MQ=255)

                                                             gtgCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGt                               <  1:3441217/91‑1 (MQ=255)

                                                              tgctgcACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTa                              <  1:760859/91‑1 (MQ=255)

                                                               gctgcACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTAt                             <  2:869311/91‑1 (MQ=255)

                                                                  gcACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGa                          >  1:2018369/1‑91 (MQ=255)

                                                                  gcACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGa                          >  1:2018356/1‑91 (MQ=255)

                                                                   cacaaaCTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGAt                         >  2:2902011/5‑91 (MQ=255)

                                                                   cACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGAt                         >  2:494318/1‑91 (MQ=255)

                                                                     cGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGAttt                       <  1:924034/91‑1 (MQ=255)

                                                                      gAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttg                      <  2:1494958/91‑1 (MQ=255)

                                                                      gAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttg                      <  2:3286530/91‑1 (MQ=255)

                                                                      gAACTTTAGTTAGTGCGTCAGAAACTTGTTGCGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttg                      >  2:204674/1‑91 (MQ=255)

                                                                       aaCTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttgt                     >  1:2833249/1‑91 (MQ=255)

                                                                          tttAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttgttgt                  >  1:360856/1‑91 (MQ=255)

                                                                          tttAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttgttgt                  <  1:3084796/91‑1 (MQ=255)

                                                                           ttagttagTGCGTCAGAAACTTGTTGTGTTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttgttgtt                 <  1:3603023/91‑1 (MQ=255)

                                                                            tagttagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATttgttgttg                >  1:2062580/1‑91 (MQ=255)

                                                                             agttagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTgc               >  2:471395/1‑91 (MQ=255)

                                                                              gttagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTCTTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTgcg              >  2:3009034/1‑91 (MQ=255)

                                                                              gttagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTgcg              >  2:250148/1‑91 (MQ=255)

                                                                               ttagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTgcgc             >  2:2683832/1‑91 (MQ=255)

                                                                                tagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCa            <  1:570886/91‑1 (MQ=255)

                                                                                tagtGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCa            <  2:174042/91‑1 (MQ=255)

                                                                                   tGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCCCTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTa         >  2:1686586/1‑91 (MQ=255)

                                                                                   tGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTa         <  1:2320011/91‑1 (MQ=255)

                                                                                   tGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTa         <  1:3315782/91‑1 (MQ=255)

                                                                                    gCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTAt        <  1:665167/91‑1 (MQ=255)

                                                                                        cAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGTAGTATTGATTTGTTGTTGCGCATTAtgcat    >  1:3563319/1‑91 (MQ=255)

                                                                                        cAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTAtgcat    <  2:2696740/91‑1 (MQ=255)

                                                                                         aGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTAtgcatt   >  2:1374082/1‑91 (MQ=255)

                                                                                          gAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTAtgcattg  >  1:72977/1‑91 (MQ=255)

ACTAATTGGCTATTATCTTCTTTATTTTGAAGTAATGCTTTAGCTTGATCAATCTTAGTTTGTGCTGCACGAACTTTAGTTAGTGCGTCAGAAACTTGTTGTGGTGTTGCACGCTCATTATTAATCACTTGTTGTGCTTCTGTTTTCGCAGTATTGATTTGTTGTTGCGCATTATGCATTG  >  USA300TCH1516_ALE/1494201‑1494381

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.