| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1594137 = | 205 (1.010) | 11 (0.060) | 7/146 | NT | 6.2% | coding (135/243 nt) | USA300HOU_RS07845 | hypothetical protein |
| ? | USA300TCH1516_ALE | 1594171 = | 144 (0.780) | coding (101/243 nt) | USA300HOU_RS07845 | hypothetical protein | |||||
TCGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1594231‑1594137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG > USA300TCH1516_ALE/1594171‑1594260 TCGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGT > 2:3174293/1‑91TCGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGT < 1:2465588/91‑1TCGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGT < 2:3957734/91‑1 CGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTG < 1:1509851/91‑1 CGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTG > 2:29202/1‑91 CGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTG > 1:1967215/1‑91 CGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTG > 1:1967301/1‑91 CGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTG > 2:3213216/1‑91 GGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGC > 1:1930537/1‑91 GGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGC < 1:3325122/91‑1 GCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGCC < 2:3829997/91‑1 CTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGCCA > 1:1159473/1‑91 AAATGGCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTA > 1:2769771/1‑91 AAATGGCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTA > 1:2361673/1‑91 TGGCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAG > 2:2187806/1‑91 TGGCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAG > 2:2187862/1‑91 GCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCC > 1:3350872/1‑91 GCACGTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCC > 1:2410649/1‑91 GTATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAA > 1:1920020/1‑91 TATTACTTTTATGGGCAGATCGAGCCATTTACTACATGAGTATGTGCCACTCGTTCGCTACACTGTTACAGATATCTTTTAGAGCCGTAAA > 2:54062/1‑91 ATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAA > 1:3228501/1‑91 ATTACTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAA > 1:2889763/1‑91 CTTTCATGGGCATATCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGG > 2:1955826/1‑91 TGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACG > 2:3893718/1‑91 gctATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGT < 2:2127413/88‑1 GCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGT > 2:137023/1‑91 ATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG < 1:690270/91‑1 ATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG > 2:3917710/1‑91 TCGGCTCTAAAAGATATCTGTATCAGGATAACGAACGAGTGGCACATACTCATGTAGTAAATGGCACGTATTACTTTCATGGGCATATCGTGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1594231‑1594137‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG > USA300TCH1516_ALE/1594171‑1594260 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |