BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1594137 =	205 (1.010)	11 (0.060)	7/146	NT	6.2%	coding (135/243 nt)	USA300HOU_RS07845	hypothetical protein
*	?	USA300TCH1516_ALE	1594171 =	144 (0.780)	11 (0.060)	7/146	NT	6.2%	coding (101/243 nt)	USA300HOU_RS07845	hypothetical protein

Only 100 of 193 total aligned reads displayed.

ATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG  >  USA300TCH1516_ALE/1594081‑1594260

atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                                           <  1:2839795/91‑1 (MQ=255)

atatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAt                                                                                           <  1:2028228/91‑1 (MQ=255)

 tatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTTTTTTTTTTTCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAtt                                                                                          >  2:258252/1‑91 (MQ=18)

 tatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAtt                                                                                          <  1:45007/91‑1 (MQ=255)

 tatatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAtt                                                                                          <  1:667535/91‑1 (MQ=255)

  atatatTTCGTGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                         <  2:2311811/91‑1 (MQ=255)

  atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                         <  1:1293975/91‑1 (MQ=255)

  atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                                                         <  2:1480871/91‑1 (MQ=255)

    atatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtac                                                                                       >  1:3404141/1‑91 (MQ=255)

     tatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtact                                                                                      >  1:976252/1‑91 (MQ=255)

     tatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtact                                                                                      <  2:1410592/91‑1 (MQ=255)

      atTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtacta                                                                                     >  1:1928353/1‑91 (MQ=255)

        ttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACa                                                                                   <  1:3706338/91‑1 (MQ=255)

         tCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACAt                                                                                  >  2:788586/1‑91 (MQ=255)

            aGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAg                                                                               >  2:27653/1‑91 (MQ=255)

            aGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAg                                                                               <  1:3318534/91‑1 (MQ=255)

             gCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAGCCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGt                                                                              >  2:3255982/1‑91 (MQ=255)

              ctctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTa                                                                             <  1:3019011/91‑1 (MQ=255)

                ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                                                           >  2:146590/1‑91 (MQ=255)

                 ttCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgt                                                                          <  1:2002796/91‑1 (MQ=255)

                  tCAGCAGTATCAAATGTCTTTTTGACGCTTTGCCAACCTGGCACGATCTGCCCATGAAAGTAATACGTGCCCTTTACTACATGAGTAtgtg                                                                         >  2:886496/1‑91 (MQ=17)

                  tCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgtg                                                                         <  1:2031296/91‑1 (MQ=255)

                  tCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgtg                                                                         <  1:3799805/91‑1 (MQ=255)

                   cagcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGc                                                                        >  2:2688464/1‑91 (MQ=255)

                    agcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGcc                                                                       <  2:449057/91‑1 (MQ=255)

                    agcagTATCAAATGTCATTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGcc                                                                       <  2:3041397/91‑1 (MQ=255)

                     gcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCa                                                                      <  1:1807459/91‑1 (MQ=255)

                     gcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCa                                                                      >  1:2945785/1‑91 (MQ=255)

                     gcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCa                                                                      >  2:3123352/1‑91 (MQ=255)

                      cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                                                     >  1:1362945/1‑91 (MQ=255)

                      cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                                                     >  2:297025/1‑91 (MQ=255)

                        gTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtc                                                                   >  1:640259/1‑91 (MQ=255)

                         tATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcg                                                                  <  2:2371297/91‑1 (MQ=255)

                         tATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcg                                                                  <  1:630110/91‑1 (MQ=255)

                          aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGTACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                                                 <  1:3246274/91‑1 (MQ=255)

                          aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                                                 <  2:3469811/91‑1 (MQ=255)

                          aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                                                 <  1:3244428/91‑1 (MQ=255)

                          aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                                                 >  2:827744/1‑91 (MQ=255)

                          aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGACCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                                                 <  1:1245866/91‑1 (MQ=255)

                           tCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgtt                                                                >  1:1991252/1‑91 (MQ=255)

                            cAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttc                                                               <  2:3378675/91‑1 (MQ=255)

                             aaaTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttcg                                                              >  1:3103200/1‑91 (MQ=255)

                             aaaTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttcg                                                              >  1:3597653/1‑91 (MQ=255)

                               aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                                            <  2:1437869/91‑1 (MQ=255)

                               aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                                                            <  1:2749105/91‑1 (MQ=255)

                                ggTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTa                                                           <  2:3365270/90‑1 (MQ=255)

                                  tCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCATTCGTTATc                                                         >  1:3791727/1‑91 (MQ=255)

                                    tttttAACGCTTTGCCAACCTGGCACGATATGCCCCTGAAAGTAATACGTGCCATTTCCTACATGAGTATGTGCCACTCGCTCGTTATCCt                                                       >  2:2791783/1‑91 (MQ=255)

                                        tAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATa                                                   <  1:1474008/91‑1 (MQ=255)

                                         aaCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATAc                                                  <  1:2865704/91‑1 (MQ=255)

                                          aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                                                 >  1:2083629/1‑91 (MQ=255)

                                          aCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACa                                                 <  2:562767/91‑1 (MQ=255)

                                           cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                                <  1:3173021/91‑1 (MQ=255)

                                           cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                                <  1:2331931/91‑1 (MQ=255)

                                           cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                                >  1:259362/1‑91 (MQ=255)

                                           cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg                                                <  1:2441679/91‑1 (MQ=255)

                                            tcTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGa                                               >  2:3710406/2‑91 (MQ=255)

                                             cTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGat                                              >  1:1029766/1‑91 (MQ=255)

                                              tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata                                             <  1:2854583/91‑1 (MQ=255)

                                              tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata                                             <  1:2198933/91‑1 (MQ=255)

                                              tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata                                             <  1:3529030/91‑1 (MQ=255)

                                               ttGCCAACGTGGCACGATGTGCCCATGACAGTAATCCGTGCCATGTCGGACAGGAGTGTGTGCCAGTCGTTCGTTATCCTGATACAGatat                                            <  2:511143/91‑1 (MQ=14)

                                               ttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGatat                                            <  2:1652165/91‑1 (MQ=255)

                                                  ccAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtt                                         >  2:1550786/1‑91 (MQ=255)

                                                    aaCCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtttt                                       >  2:2539913/1‑91 (MQ=255)

                                                     aaatggcacgtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTa                                      >  1:2769771‑M2/38‑91 (MQ=255)

                                                     aaatggcacgtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTa                                      >  1:2361673‑M2/38‑91 (MQ=255)

                                                      ccTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTag                                     >  1:1598461/1‑91 (MQ=255)

                                                       cTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTaga                                    <  2:3811070/91‑1 (MQ=255)

                                                        tggcacgtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTagag                                   >  2:2187862‑M2/35‑91 (MQ=255)

                                                        TGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTagag                                   >  1:1159473‑M1/1‑91 (MQ=255)

                                                         GGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGc                                  <  2:3829997‑M1/91‑1 (MQ=255)

                                                          gcacgtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                                 >  1:2410649‑M2/33‑91 (MQ=255)

                                                          gcacgtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGcc                                 >  1:3350872‑M2/33‑91 (MQ=255)

                                                           CACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCg                                >  1:1967215‑M1/1‑91 (MQ=255)

                                                            ACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                               >  2:3174293‑M1/1‑91 (MQ=255)

                                                            ACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGa                               <  2:3957734‑M1/91‑1 (MQ=255)

                                                              gtattactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGaaa                             >  1:1920020‑M2/29‑91 (MQ=255)

                                                                tatGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACGCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGaaaaa                           <  2:3003396/91‑1 (MQ=255)

                                                                attactttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGaaaaa                           >  1:3228501‑M2/27‑91 (MQ=255)

                                                                 atGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAAt                          >  1:915079/1‑91 (MQ=255)

                                                                    ctttcatgggcatatcgtgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTgg                       >  2:1955826‑M2/23‑91 (MQ=255)

                                                                     ccATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGt                      >  1:3594392/1‑91 (MQ=255)

                                                                       aTGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGtta                    >  2:3931174/1‑90 (MQ=255)

                                                                         gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa                  <  2:3731834/91‑1 (MQ=255)

                                                                         gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa                  <  2:3732663/91‑1 (MQ=255)

                                                                         gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa                  >  1:303788/1‑91 (MQ=255)

                                                                         gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa                  <  2:409349/91‑1 (MQ=255)

                                                                         gAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTaa                  <  2:606730/91‑1 (MQ=255)

                                                                           aaGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGc                >  2:3529495/1‑91 (MQ=255)

                                                                            aGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCg               <  2:3616256/91‑1 (MQ=255)

                                                                              tAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGtt             <  2:2686343/91‑1 (MQ=255)

                                                                                aTACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCt           >  1:1072884/1‑91 (MQ=255)

                                                                                aTACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCt           >  1:1381269/1‑91 (MQ=255)

                                                                                 tACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCtt          <  1:738652/91‑1 (MQ=255)

                                                                                  aCGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCttt         <  1:2824040/91‑1 (MQ=255)

                                                                                     tgccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACg      >  2:3893718‑M2/6‑91 (MQ=255)

                                                                                      gctaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGt     <  2:2127413‑M2/87‑1 (MQ=255)

                                                                                      gccaTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGt     >  2:137023‑M2/5‑91 (MQ=255)

                                                                                         aTTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTgcg  <  1:690270‑M2/90‑1 (MQ=255)

ATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAGCCGAAAAATTGGTTTAAGCGTTCTTTACGTGCG  >  USA300TCH1516_ALE/1594081‑1594260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.