BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1594137 =	205 (1.010)	11 (0.060)	7/146	NT	6.2%	coding (135/243 nt)	USA300HOU_RS07845	hypothetical protein
*	?	USA300TCH1516_ALE	1594171 =	144 (0.780)	11 (0.060)	7/146	NT	6.2%	coding (101/243 nt)	USA300HOU_RS07845	hypothetical protein

Only 100 of 232 total aligned reads displayed.

CTTCTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAG  >  USA300TCH1516_ALE/1594047‑1594227

cgcacgtaaagaacgcttaaaccaatttttcggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaat                                                                                            <  1:690270‑M1/1‑1 (MQ=255)

cgcacgtaaagaacgcttaaaccaatttttcggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaat                                                                                            >  2:3917710‑M1/91‑91 (MQ=255)

   cTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGc                                                                                         <  2:2034986/91‑1 (MQ=255)

   acgtaaagaacgcttaaaccaatttttcggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGc                                                                                         >  2:137023‑M1/88‑91 (MQ=255)

    tGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCa                                                                                        >  1:1801711/1‑91 (MQ=255)

    cgtaaagaacgcttaaaccaatttttcggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGCa                                                                                        >  2:3893718‑M1/87‑91 (MQ=255)

     gTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCAc                                                                                       <  1:1441783/91‑1 (MQ=255)

     gTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCAc                                                                                       <  1:3277635/91‑1 (MQ=255)

     gTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCAc                                                                                       >  1:3074420/1‑91 (MQ=255)

       tCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGa                                                                                     <  2:1646292/91‑1 (MQ=255)

        ccTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGat                                                                                    <  1:2108218/91‑1 (MQ=255)

        ccTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGat                                                                                    <  1:1845809/91‑1 (MQ=255)

          tCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGatat                                                                                  >  2:2578000/1‑91 (MQ=255)

           cGTATTCCAAACCATGTTGCTTTATATATATTTCGGGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 <  2:3007442/91‑1 (MQ=255)

           cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 <  1:1684194/91‑1 (MQ=255)

           cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 >  2:2749253/1‑91 (MQ=255)

           cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 <  2:1420855/91‑1 (MQ=255)

           cGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 >  1:1092311/1‑91 (MQ=255)

           cGTATTCCAAACCATGTTGCTATATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATg                                                                                 <  2:1781102/91‑1 (MQ=255)

            gTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGc                                                                                <  2:3410614/91‑1 (MQ=255)

            gTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGc                                                                                <  1:874125/91‑1 (MQ=255)

            gTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGc                                                                                <  2:129799/91‑1 (MQ=255)

               ttCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCa                                                                             <  2:3344250/91‑1 (MQ=255)

               ttCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCa                                                                             >  2:1832783/1‑91 (MQ=255)

                tCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCAt                                                                            <  1:2238427/91‑1 (MQ=255)

                tCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCAt                                                                            <  2:648051/91‑1 (MQ=255)

                 ccAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATg                                                                           <  1:1295712/91‑1 (MQ=255)

                  cAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGa                                                                          >  2:210196/1‑91 (MQ=255)

                  cAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGa                                                                          >  1:1504335/1‑91 (MQ=255)

                   aaaCCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGaa                                                                         >  1:2910495/1‑91 (MQ=255)

                     aCCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAg                                                                       >  2:2820767/1‑91 (MQ=255)

                     aCCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAg                                                                       <  1:1869911/91‑1 (MQ=255)

                     aCCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAg                                                                       <  1:1171226/91‑1 (MQ=255)

                      ccATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGt                                                                      <  1:3761896/91‑1 (MQ=255)

                      ccATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGt                                                                      >  1:5677/1‑91 (MQ=255)

                       cATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTa                                                                     <  2:3125953/91‑1 (MQ=255)

                         tGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGCAAGTAAt                                                                   >  2:3506664/1‑91 (MQ=255)

                         tGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAAt                                                                   >  2:2949917/1‑91 (MQ=255)

                          tttacggctctaaaagatatctgtaacagtgtagcgaacgagtggcacatactcatgtagtaaaTGGCTCGATCTGCCCATAAAAGTAATa                                                                  >  2:54062‑M1/65‑91 (MQ=255)

                          gTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATa                                                                  <  2:3151174/91‑1 (MQ=255)

                           tttcggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGCACGATATGCCCATGAAAGTAATAc                                                                 >  1:1920020‑M1/64‑91 (MQ=255)

                           ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                 >  2:1857462/1‑91 (MQ=255)

                           ttGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATAc                                                                 >  1:3932063/1‑91 (MQ=255)

                            tGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACg                                                                <  2:2039479/91‑1 (MQ=255)

                             gCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGt                                                               >  1:1238258/1‑91 (MQ=255)

                             gCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGt                                                               <  1:2211427/91‑1 (MQ=255)

                              cTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTg                                                              >  2:3716054/1‑91 (MQ=255)

                               ggctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGCACGATATGCCCATGAAAGTAATACGTGc                                                             >  1:3350872‑M1/60‑91 (MQ=255)

                                 tatatataTTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCa                                                           <  1:459000/91‑1 (MQ=255)

                                 ctctaaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGCACGATATGCCCATGAAAGTAATACGTGCCa                                                           >  2:2187862‑M1/58‑91 (MQ=255)

                                    taaaagatatctgtatcaggataacgaacgagtggcacatactcatgtagtaaaTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                        >  1:2769771‑M1/55‑91 (MQ=255)

                                    atatatTTCGTGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                        <  2:2311811/91‑1 (MQ=255)

                                    atatatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCAttt                                                        <  2:1480871/91‑1 (MQ=255)

                                       tatTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTtact                                                     >  1:976252/1‑91 (MQ=255)

                                          ttCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACa                                                  <  1:2852994/91‑1 (MQ=255)

                                           tCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACAt                                                 >  2:788586/1‑91 (MQ=255)

                                             gAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGa                                               >  1:3185795/1‑91 (MQ=255)

                                              aGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAg                                              >  2:27653/1‑91 (MQ=255)

                                                ctctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTa                                            <  1:3019011/91‑1 (MQ=255)

                                                  ctTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtg                                          >  2:146590/1‑91 (MQ=255)

                                                   ttCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgt                                         <  1:2002796/91‑1 (MQ=255)

                                                   ttCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgt                                         <  2:2593378/91‑1 (MQ=255)

                                                   ttCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgt                                         <  1:590652/91‑1 (MQ=255)

                                                    tCAGCAGTATCAAATGTCTTTTTGACGCTTTGCCAACCTGGCACGATCTGCCCATGAAAGTAATACGTGCCCTTTACTACATGAGTAtgtg                                        >  2:886496/1‑91 (MQ=17)

                                                    tCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTAtgtg                                        <  1:2031296/91‑1 (MQ=255)

                                                     cagcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGc                                       >  2:2688464/1‑91 (MQ=255)

                                                      agcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGcc                                      <  2:449057/91‑1 (MQ=255)

                                                      agcagTATCAAATGTCATTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGcc                                      <  2:3041397/91‑1 (MQ=255)

                                                       gcagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCa                                     >  1:769403/1‑91 (MQ=255)

                                                        cagTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCAc                                    >  1:1362945/1‑91 (MQ=255)

                                                          gTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtc                                  >  1:640259/1‑91 (MQ=255)

                                                           tATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcg                                 <  2:2371297/91‑1 (MQ=255)

                                                           tATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcg                                 <  1:3293352/91‑1 (MQ=255)

                                                            aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGTACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                <  1:3244561/91‑1 (MQ=255)

                                                            aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGGACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                <  1:3243231/91‑1 (MQ=255)

                                                            aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                >  2:827744/1‑91 (MQ=255)

                                                            aTCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGACCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgt                                <  1:1246209/91‑1 (MQ=255)

                                                             tCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgtt                               >  1:1991252/1‑91 (MQ=255)

                                                              cAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttc                              <  2:3378675/91‑1 (MQ=255)

                                                               aaaTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttcg                             >  1:3103200/1‑91 (MQ=255)

                                                               aaaTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACtcgttcg                             <  1:2087676/91‑1 (MQ=255)

                                                                 aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                           <  2:1437869/91‑1 (MQ=255)

                                                                 aTGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTcgttcgtt                           <  1:268524/91‑1 (MQ=255)

                                                                    tCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCATTCGTTATc                        >  1:3792098/1‑91 (MQ=255)

                                                                           aaCGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATAc                 <  1:2865704/91‑1 (MQ=255)

                                                                             cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg               >  1:259362/1‑91 (MQ=255)

                                                                             cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg               <  1:2331931/91‑1 (MQ=255)

                                                                             cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg               <  1:2780981/91‑1 (MQ=255)

                                                                             cGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAg               <  1:2441679/91‑1 (MQ=255)

                                                                              tcTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGa              >  2:3710406/2‑91 (MQ=255)

                                                                               cTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGat             >  1:1029766/1‑91 (MQ=255)

                                                                                tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata            <  1:2198933/91‑1 (MQ=255)

                                                                                tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata            <  1:3529030/91‑1 (MQ=255)

                                                                                tttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGata            <  1:3817468/91‑1 (MQ=255)

                                                                                 ttGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGatat           <  1:3605823/91‑1 (MQ=255)

                                                                                  tGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATc          <  2:589390/91‑1 (MQ=255)

                                                                                    ccAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtt        >  1:2367659/1‑91 (MQ=255)

                                                                                    ccAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtt        >  2:1550786/1‑91 (MQ=255)

                                                                                      aaCCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCtttt      >  2:2539913/1‑91 (MQ=255)

                                                                                         cTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTaga   <  2:3811070/91‑1 (MQ=255)

CTTCTGTTCCTCGTATTCCAAACCATGTTGCTTTATATATATTTCGAGCTCTTCAGCAGTATCAAATGTCTTTTTAACGCTTTGCCAACCTGGCACGATATGCCCATGAAAGTAATACGTGCCATTTACTACATGAGTATGTGCCACTCGTTCGTTATCCTGATACAGATATCTTTTAGAG  >  USA300TCH1516_ALE/1594047‑1594227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.