| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1608653 | 150 (0.740) | 7 (0.040) | 5/142 | NT | 5.0% | coding (224/930 nt) | USA300HOU_RS07970 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1608670 | NA (NA) | coding (207/930 nt) | USA300HOU_RS07970 | hypothetical protein | |||||
TGCCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1608555‑1608653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagaattTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT < USA300TCH1516_ALE/1608670‑1608581 TGCCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTT < 1:115730/91‑1 GCCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTA < 1:2923508/91‑1 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA < 1:753984/91‑1 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA < 1:1363806/91‑1 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA > 1:1418432/1‑91 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA > 1:1418615/1‑91 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA > 1:2700370/1‑91 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA < 2:282190/91‑1 CCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTCGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAA < 2:1331501/91‑1 CATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAA > 1:2539018/1‑91 CATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAA < 2:3744711/91‑1 CATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAA < 2:382597/91‑1 CATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAA > 2:858727/1‑91 ATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAG > 1:1353368/1‑91 ATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAG < 2:1019995/91‑1 TGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAAGATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGA < 1:3421634/91‑1 TGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGA > 2:3274388/1‑91 ATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAAT > 2:934563/1‑91 ttgTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATT > 2:3458301/4‑91 TCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATT > 1:1635932/1‑91 ACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACA < 1:2817220/91‑1 CTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTC < 1:1702193/91‑1 CTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTC < 1:1631770/91‑1 CACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTCTTT < 1:1298657/91‑1 CCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAA < 1:3510340/91‑1 CATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAA < 1:2541971/91‑1 CATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAA < 1:3006864/91‑1 tcgaAAAGAAAATAAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGAT < 2:1327698/87‑1 TAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGT < 1:3645834/91‑1 TAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGT > 2:3196088/1‑91 TAAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGT > 1:1693881/1‑91 AAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTG < 2:2768751/91‑1 AAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTG < 2:2769276/91‑1 AAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTG < 2:2769387/91‑1 AAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTG < 1:3362025/91‑1 AAAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTG > 1:1575889/1‑91 AAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGT < 1:3609671/91‑1 AAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGT < 1:1355272/91‑1 AAGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTGTGGACTAAGAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGT < 2:608782/91‑1 tGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:3925133/90‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:1397383/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:534707/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 1:2254935/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:1640151/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:1562954/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA > 2:1507973/1‑91 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA > 2:10884/1‑91 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA > 1:3031558/1‑91 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:3576782/91‑1 AGAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA > 2:3612383/1‑91 AGAAATTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTA < 2:661846/91‑1 GAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAG < 1:195211/91‑1 GAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAG < 1:3633971/91‑1 GAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAG > 1:2575123/1‑91 GAATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAG > 1:621249/1‑91 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA < 1:238789/91‑1 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA > 2:1735158/1‑91 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA < 1:1661905/91‑1 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA < 1:1776585/91‑1 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTCGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA < 2:3463566/91‑1 AATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTGGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGA < 2:2103715/91‑1 ATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAA > 1:3258294/1‑91 ATTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAA > 2:3324805/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAATATAACTTTTGACTAAAAGTTAAAGCTACATATGTTGTAGGTAAAGATGATGGTGTAGAAG > 2:1412829/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAG > 1:1072936/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAG > 1:2602028/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAG > 2:1928891/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAG > 1:2602084/1‑91 TTTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAG < 1:2828180/91‑1 TTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT > 1:1913194/1‑91 TTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT > 1:1916194/1‑91 TTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT > 2:56409/1‑91 TTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT > 1:1122606/1‑91 TGCCATGATCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1608555‑1608653‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taaagaattTGAAAAAGTAGGTGAACAATTCTTTAAAGATAACTTTGGACTAAAAGTTAAAGCTACAAATGTTGTAGGTAAAGATGATGGTGTAGAAGT < USA300TCH1516_ALE/1608670‑1608581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |