| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1608653 | 150 (0.740) | 7 (0.040) | 5/142 | NT | 5.0% | coding (224/930 nt) | USA300HOU_RS07970 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1608670 | NA (NA) | coding (207/930 nt) | USA300HOU_RS07970 | hypothetical protein | |||||
Only 100 of 229 total aligned reads displayed.
TCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACAT > USA300TCH1516_ALE/1608563‑1608743 | tCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGtt < 1:205115/91‑1 (MQ=33) cacaATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTc > 2:2543354/1‑91 (MQ=32) acaATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCa > 2:2642479/1‑91 (MQ=31) acaATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCa < 2:1153096/91‑1 (MQ=31) aCTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTtgaaaaagtaggtgaaca < 1:2817220‑M1/91‑19 (MQ=255) cTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTtgaaaaagtaggtgaacaattc < 1:1631770‑M1/91‑23 (MQ=255) cTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTtgaaaaagtaggtgaacaattc < 1:1702193‑M1/91‑23 (MQ=255) catcatCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTtgaaaaagtaggtgaacaattctttaaa < 1:3006864‑M1/91‑29 (MQ=255) ccTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 1:99494/91‑1 (MQ=31) ccTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 1:3352769/91‑1 (MQ=31) ccTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 1:2003250/91‑1 (MQ=31) ccTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 2:2050617/91‑1 (MQ=31) ccTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 2:1111652/91‑1 (MQ=31) ccTACAACATTTGTAGATTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCg < 2:3777952/91‑1 (MQ=14) tACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCa > 2:3731636/1‑91 (MQ=33) acaacaTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCaa > 1:211428/1‑91 (MQ=34) caacaTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCaaa > 1:3951673/1‑91 (MQ=34) aacaTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAAt > 1:2685076/1‑91 (MQ=34) acaTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCTATTTCTTTTCGATGCTACTTCGCAAAtt > 2:3726004/1‑91 (MQ=11) caTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTc < 1:1941212/91‑1 (MQ=34) caTTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTc > 2:1214767/1‑91 (MQ=34) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTTTATTTTTTTACGATGCTTCTTCGCAAATTCAATCg > 2:361613/1‑91 (MQ=11) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg > 1:3186855/1‑91 (MQ=34) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg < 1:3050873/91‑1 (MQ=33) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg < 2:119737/91‑1 (MQ=34) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg > 2:3018503/1‑91 (MQ=34) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg < 1:1562688/91‑1 (MQ=34) gTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCg < 1:71283/91‑1 (MQ=33) aGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAGTTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAACTTCAATCGcc > 1:2871291/1‑90 (MQ=255) aGCTTTAACTTTTAGTCCAAAGTTATATTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCa < 2:3421943/91‑1 (MQ=21) gCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCAt < 1:615828/91‑1 (MQ=34) gCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCAt > 1:3321876/1‑91 (MQ=34) cTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCAtt < 2:824116/91‑1 (MQ=35) ttAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCTTATTCTTTACGATGCTTCTTCGCAAATTCTATCGCAtttt > 2:18497/1‑91 (MQ=255) tAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCAttttt < 1:3526200/91‑1 (MQ=38) cTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTc < 1:667544/91‑1 (MQ=37) ttttAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCt < 1:1144423/91‑1 (MQ=39) tttAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTg > 1:2373754/1‑91 (MQ=38) tttAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTGTTCAAAGTCTTTACGGTGCTTCTTCGCAAATTCAATCGCATTTTTTTCTg < 2:2582852/91‑1 (MQ=255) ttAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGc < 2:1713163/91‑1 (MQ=39) tAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCa > 2:1543731/1‑91 (MQ=38) tAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCa > 2:3322603/1‑91 (MQ=39) tAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCa > 1:431393/1‑91 (MQ=39) gTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAgg < 2:1004840/91‑1 (MQ=38) gTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAgg < 1:1833114/91‑1 (MQ=39) gTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAgg < 1:1664949/91‑1 (MQ=39) gTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAgg > 1:1045207/1‑91 (MQ=39) ccAGAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCg < 1:3557409/91‑1 (MQ=255) ccAAAGTTATCTTTCAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGCTGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGTCg > 2:3365333/1‑91 (MQ=255) cAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGTTGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCgg > 1:1407896/1‑91 (MQ=255) cAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCgg > 2:113682/1‑91 (MQ=255) cAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCgg > 1:1067486/1‑91 (MQ=255) aaGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGtt > 2:2304894/1‑91 (MQ=255) aGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTg > 1:42752/1‑91 (MQ=255) gTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGa < 2:2896986/91‑1 (MQ=255) gTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTGCTGCAGGCGGTTGa < 2:1697803/91‑1 (MQ=255) ttATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGaa < 1:1877327/91‑1 (MQ=255) ttATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGaa < 1:689698/91‑1 (MQ=255) ttATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGaa < 1:3539426/91‑1 (MQ=255) tATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGaaa < 2:1847381/91‑1 (MQ=255) aTCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAg < 1:87713/91‑1 (MQ=255) aTCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAg < 2:2373968/91‑1 (MQ=255) tCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGc < 1:385788/91‑1 (MQ=255) tCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGc < 1:22807/91‑1 (MQ=255) tCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGc < 2:1681053/91‑1 (MQ=255) ttAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCtt < 2:904920/91‑1 (MQ=255) tAAAGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggt < 1:3645834‑M1/91‑83 (MQ=255) tAAAGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggt > 2:3196088‑M1/1‑9 (MQ=255) tAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCCATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTg > 2:3561192/1‑91 (MQ=255) aaaGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtg < 1:3362025‑M1/91‑84 (MQ=255) aaaGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtg < 2:2768751‑M1/91‑84 (MQ=255) aaaGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtg < 2:2769387‑M1/91‑84 (MQ=255) aaaGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTgg < 2:2960513/91‑1 (MQ=255) aaGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgt < 1:3609671‑M1/91‑85 (MQ=255) aaGAATTtgaaaaagtaggtgaacaattctttaaagataactgtggactaagagttaaagctacaaatgttgtaggtaaagatgatggtgt < 2:608782‑M1/91‑85 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta < 2:1640151‑M1/91‑86 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta > 2:10884‑M1/1‑6 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta < 2:534707‑M1/91‑86 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta < 2:3576782‑M1/91‑86 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta < 1:2254935‑M1/91‑86 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta < 2:1397383‑M1/91‑86 (MQ=255) aGAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgta > 2:1507973‑M1/1‑6 (MQ=255) aGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGcc < 2:769492/91‑1 (MQ=255) aGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGcc < 1:727525/91‑1 (MQ=255) gAATTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtag > 1:2575123‑M1/1‑5 (MQ=255) gAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGTATTTTTTTCTGCAGTCGGTTGAAAGCCTTGGCCt > 2:3897821/1‑91 (MQ=255) aaTTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtaga < 1:1661905‑M1/91‑88 (MQ=255) aaTTtgaaaaagtaggtgaacaattctttaaagataactttcgactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtaga < 2:3463566‑M1/91‑88 (MQ=255) aTTtgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaa > 1:3258294‑M1/1‑3 (MQ=255) aTTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTAc < 2:1335042/91‑1 (MQ=255) aTTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTAc < 1:1329524/91‑1 (MQ=255) tttgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaag > 1:2602084‑M1/1‑2 (MQ=255) tttgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaag > 2:1928891‑M1/1‑2 (MQ=255) ttGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCTGTTGAAAGCCTTGGCCTACa > 2:2199058/1‑91 (MQ=255) ttGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACa > 1:283213/1‑91 (MQ=255) ttgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaagt > 1:1913194‑M1/1‑1 (MQ=255) ttgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaagt > 2:56409‑M1/1‑1 (MQ=255) ttgaaaaagtaggtgaacaattctttaaagataactttggactaaaagttaaagctacaaatgttgtaggtaaagatgatggtgtagaagt > 1:1122606‑M1/1‑1 (MQ=255) tGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACat < 1:2500270/91‑1 (MQ=255) tGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACat > 2:2944740/1‑91 (MQ=255) | TCTTCACAATGCACATAAACTTCTACACCATCATCTTTACCTACAACATTTGTAGCTTTAACTTTTAGTCCAAAGTTATCTTTAAAGAATTGTTCACCTACTTTTTCAAATTCTTTACGATGCTTCTTCGCAAATTCAATCGCATTTTTTTCTGCAGGCGGTTGAAAGCCTTGGCCTACAT > USA300TCH1516_ALE/1608563‑1608743 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |