| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1614319 = | 217 (1.070) | 17 (0.090) | 8/150 | NT | 8.1% | intergenic (+14/+64) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD |
| ? | USA300TCH1516_ALE | 1614368 = | 181 (0.950) | intergenic (+63/+15) | USA300HOU_RS08000/xerD_3 | hypothetical protein/Tyrosine recombinase XerD | |||||
AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614413‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT > USA300TCH1516_ALE/1614368‑1614457 AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 2:1272348/91‑1AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC < 1:579023/91‑1AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGC > 1:440009/1‑91 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAATGTCAAAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT < 2:3711145/91‑1 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT > 2:3220208/1‑91 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT > 2:1970885/1‑91 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT > 2:1970841/1‑91 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT < 2:1252800/91‑1 ATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCT < 1:708814/91‑1 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 2:3503995/91‑1 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 2:3503601/91‑1 TGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTT < 1:2851276/91‑1 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT > 2:3312554/1‑91 GTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTT > 1:238432/1‑91 AAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACA > 2:943475/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:3940779/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:3940748/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 2:1495282/1‑91 CACAATACACATGACTAAAAATGTCTGTGCTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTT > 1:3087103/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:145029/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:1853097/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTGTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 2:3663869/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTCTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 2:3663947/1‑91 ACAATACACATGACTAAAAATGTCTGTGCTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTT > 1:3016190/1‑91 CAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTC > 2:2539368/1‑91 CAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTC > 1:1010063/1‑91 AATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCT > 1:2111347/1‑91 ATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTA > 1:215454/1‑91 ATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTA > 2:1960713/1‑91 TACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAA > 1:3519515/1‑91 GACTAAAAATGTCTGTGCTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGA > 2:178421/1‑91 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT > 1:3631706/1‑91 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT < 2:1315171/91‑1 TTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGT < 1:3037983/91‑1 TTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG < 1:1918980/91‑1 TTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG < 1:1810321/91‑1 TTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAG > 1:2892432/1‑91 TGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT < 2:3420674/91‑1 AATGTATAACCAATTTCATCCTAGAGCATAAAGTGAACAATAACTCAAAAGTCACAATACACATGACTAAAAATGTCTGTGCTATTGTGGCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1614413‑1614319‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGT > USA300TCH1516_ALE/1614368‑1614457 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |