BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1614319 =	217 (1.070)	17 (0.090)	8/150	NT	8.1%	intergenic (+14/+64)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD
*	?	USA300TCH1516_ALE	1614368 =	181 (0.950)	17 (0.090)	8/150	NT	8.1%	intergenic (+63/+15)	USA300HOU_RS08000/xerD_3	hypothetical protein/Tyrosine recombinase XerD

Only 100 of 242 total aligned reads displayed.

CAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614279‑1614458

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  1:1147880/1‑91 (MQ=255)

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           <  2:432893/91‑1 (MQ=255)

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  1:2533718/1‑91 (MQ=255)

cAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGa                                                                                           >  2:2688248/1‑91 (MQ=255)

 aaTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAg                                                                                          >  1:598919/1‑91 (MQ=255)

  aTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGt                                                                                         <  1:2691408/91‑1 (MQ=255)

  aTTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGt                                                                                         <  1:2221604/91‑1 (MQ=255)

     aaGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAt                                                                                      <  2:103585/91‑1 (MQ=255)

      aGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTAtt                                                                                     >  1:3510403/1‑91 (MQ=255)

        aaaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGt                                                                                   <  1:628320/91‑1 (MQ=255)

         aaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGtt                                                                                  <  1:2672631/91‑1 (MQ=255)

         aaaCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGtt                                                                                  <  1:2342698/91‑1 (MQ=255)

           aCATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCa                                                                                >  2:3369753/1‑91 (MQ=255)

            cATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCAc                                                                               <  1:3660688/91‑1 (MQ=255)

             aTAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACt                                                                              <  1:931844/91‑1 (MQ=255)

              tAGACGTAATTAATCAACCACTTTATAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             <  2:3938147/91‑1 (MQ=255)

              tAGACGTAATTAATCAACCAATTTAAAAAAGCCACGATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             <  2:3044909/91‑1 (MQ=255)

              tAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACtt                                                                             >  2:2238809/1‑91 (MQ=255)

               aGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACttt                                                                            >  1:1745525/1‑91 (MQ=255)

               aGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACttt                                                                            <  1:107491/91‑1 (MQ=255)

                gACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTa                                                                           >  2:1572480/1‑91 (MQ=255)

                gACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTa                                                                           >  1:3840757/1‑91 (MQ=255)

                   gTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGc                                                                        <  2:1241807/91‑1 (MQ=255)

                   gTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGc                                                                        <  2:3331002/91‑1 (MQ=255)

                      attaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGctct                                                                     >  1:1666926/1‑91 (MQ=255)

                      attaatCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGctct                                                                     >  2:3309982/1‑91 (MQ=255)

                          atCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGa                                                                 >  2:83615/1‑91 (MQ=255)

                           tCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGAt                                                                <  1:1360223/91‑1 (MQ=255)

                            cAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATg                                                               >  2:1249355/1‑91 (MQ=255)

                            cAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATg                                                               >  2:1064382/1‑91 (MQ=255)

                            cAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTAGTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATg                                                               <  2:3256034/91‑1 (MQ=255)

                              aCCACTTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaa                                                             <  1:3297475/91‑1 (MQ=255)

                              aCCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaa                                                             >  2:4086/1‑91 (MQ=255)

                               ccAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGaaa                                                            <  1:3128654/91‑1 (MQ=255)

                                 aaTTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAAtt                                                          >  2:2916946/1‑91 (MQ=255)

                                   tttAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTgg                                                        >  1:3250621/1‑91 (MQ=255)

                                   tttAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATAGTTCACTTTATGCTCTAGGATGAAATTgg                                                        >  1:2188193/1‑91 (MQ=255)

                                   tttAAAAAAGCCACAATAGCACAGACATATTTAGTCATGTGTATAGTGACTATTGAGTTATTGTTCACTCTATGCTCTAGGATGAAATTgg                                                        >  2:762390/1‑91 (MQ=255)

                                    ttAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGt                                                       <  2:3897923/91‑1 (MQ=255)

                                    ttAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGt                                                       <  2:2704876/91‑1 (MQ=255)

                                     tAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGtt                                                      >  1:3572483/1‑91 (MQ=255)

                                     tAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGtt                                                      <  1:2274156/91‑1 (MQ=255)

                                      aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     <  1:2227956/91‑1 (MQ=255)

                                      aaaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTATGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTta                                                     >  2:3489868/1‑91 (MQ=255)

                                       aaaaaGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTtat                                                    >  1:2433735/1‑91 (MQ=255)

                                         AAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATAc                                                  >  1:238432‑M1/1‑91 (MQ=255)

                                          AAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACa                                                 <  2:3503601‑M1/91‑1 (MQ=255)

                                           AGCCACAATAGCACAGACATTTTTAGTCATGTGTATTTTGACATTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAt                                                <  2:3711145‑M1/91‑1 (MQ=255)

                                           AGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAt                                                <  1:708814‑M1/91‑1 (MQ=255)

                                            GCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtt                                               >  1:440009‑M1/1‑91 (MQ=255)

                                            GCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtt                                               <  2:1272348‑M1/91‑1 (MQ=255)

                                              cacaatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAtttt                                             >  2:1495282‑M2/44‑91 (MQ=255)

                                               acaatacacatgactaaaaatgtctgtgctattgtggcttgtGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  2:3663869‑M2/43‑91 (MQ=255)

                                               acaatacacatgactaaaaatgtctgtgctattgtgacttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            >  1:3016190‑M2/43‑91 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:3441783/91‑1 (MQ=255)

                                               acaATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACAttttt                                            <  1:1809729/91‑1 (MQ=255)

                                                caatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTc                                           >  2:2539368‑M2/42‑91 (MQ=255)

                                                caatacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTc                                           >  1:1010063‑M2/42‑91 (MQ=255)

                                                 aaTAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCt                                          <  2:1982474/91‑1 (MQ=255)

                                                  atacacatgactaaaaatgtctgtgctattgtggcttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTa                                         >  2:1960713‑M2/40‑91 (MQ=255)

                                                    aGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAt                                       >  2:541207/1‑91 (MQ=255)

                                                    aGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAt                                       <  1:465243/91‑1 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      >  1:1851837/1‑91 (MQ=255)

                                                     gCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAtt                                      <  2:2733155/91‑1 (MQ=255)

                                                      cacaGACTTTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAtttt                                     <  2:3507648/91‑1 (MQ=255)

                                                      cacaGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAttt                                     >  2:3571688/1‑91 (MQ=255)

                                                      cacaGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAAttt                                     <  2:2628744/91‑1 (MQ=255)

                                                          gACGTTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATGCATTTTTCTAATTTgaga                                 >  2:1708173/1‑91 (MQ=255)

                                                          gACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTgagt                                 >  2:1709561/1‑90 (MQ=255)

                                                          gACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTgaga                                 <  2:526373/91‑1 (MQ=255)

                                                            cATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGAtt                               >  1:2105881/1‑91 (MQ=255)

                                                             aTTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGAttt                              <  2:166374/91‑1 (MQ=255)

                                                              tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  1:2360145/91‑1 (MQ=255)

                                                              tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             <  2:3606786/91‑1 (MQ=255)

                                                              tttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTc                             >  1:2760974/1‑91 (MQ=255)

                                                               ttttAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTAAACATTTTTCTAATTTGAGATTTCg                            <  2:3213192/91‑1 (MQ=255)

                                                                   aatCATGTGTATTGTGACTTTTGAGTTATTGTTCACGTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        <  2:653983/89‑1 (MQ=255)

                                                                   aGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        <  2:2833011/91‑1 (MQ=255)

                                                                   aGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAAc                        <  1:1605758/91‑1 (MQ=255)

                                                                    gTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGCAATTGGCTATACATTTTTCTCATTTGAGATTTCGAAACa                       >  2:530090/1‑91 (MQ=255)

                                                                    gTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACa                       >  2:2641834/1‑91 (MQ=255)

                                                                     tCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAt                      <  2:1107638/91‑1 (MQ=255)

                                                                      cATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtg                     >  1:3705113/1‑91 (MQ=255)

                                                                       aTGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgt                    >  1:899071/1‑91 (MQ=255)

                                                                        tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   >  1:1433997/1‑91 (MQ=255)

                                                                        tgtgTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACAtgtg                   <  1:3925959/91‑1 (MQ=255)

                                                                         gtgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATgtgt                  <  2:3173665/91‑1 (MQ=255)

                                                                          tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 <  2:211418/91‑1 (MQ=255)

                                                                          tgtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGta                 <  1:2758453/91‑1 (MQ=255)

                                                                           gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  2:2365783/91‑1 (MQ=255)

                                                                           gtATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGtat                <  2:686619/91‑1 (MQ=255)

                                                                                gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           >  2:3531927/1‑91 (MQ=255)

                                                                                gtgACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGt           <  2:1964022/91‑1 (MQ=255)

                                                                                  gACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTGATTTGAGATTTCGATACATGTGTATAGAGTTg         >  1:3380200/1‑91 (MQ=255)

                                                                                  gACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTg         <  1:2269800/91‑1 (MQ=255)

                                                                                     ttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt      <  2:1315171‑M2/87‑1 (MQ=255)

                                                                                     ttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt      >  1:3631706‑M2/5‑91 (MQ=255)

                                                                                     ttttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgt      <  1:3037983‑M2/87‑1 (MQ=255)

                                                                                       ttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtag    <  1:1918980‑M2/89‑1 (MQ=255)

                                                                                       ttGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGgtag    >  1:2892432‑M2/3‑91 (MQ=255)

CAATTAAGAAAACATAGACGTAATTAATCAACCAATTTAAAAAAGCCACAATAGCACAGACATTTTTAGTCATGTGTATTGTGACTTTTGAGTTATTGTTCACTTTATGCTCTAGGATGAAATTGGTTATACATTTTTCTAATTTGAGATTTCGAAACATGTGTATAGAGTTGGGTAGTA  >  USA300TCH1516_ALE/1614279‑1614458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.