| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1619608 | 153 (0.750) | 9 (0.050) | 6/148 | NT | 5.3% | intergenic (+11/+94) | proC/rnz | Pyrroline‑5‑carboxylate reductase/Ribonuclease Z |
| ? | USA300TCH1516_ALE | = 1619646 | 181 (0.960) | intergenic (+49/+56) | proC/rnz | Pyrroline‑5‑carboxylate reductase/Ribonuclease Z | |||||
ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1619513‑1619608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCGA < USA300TCH1516_ALE/1619646‑1619557 ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAA < 2:3689166/91‑1ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAA > 2:3465769/1‑91ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAA < 1:2038154/91‑1ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAA > 2:2588946/1‑91ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAA > 1:3698824/1‑91 TATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAA < 2:3194502/91‑1 ATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAAC > 1:3610850/1‑91 TGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACC > 2:2819178/1‑91 TGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACC > 2:2413854/1‑91 TGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACC < 1:3333484/91‑1 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG > 1:2647527/1‑91 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG > 1:2647182/1‑91 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG < 2:2320522/91‑1 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG < 2:1448003/91‑1 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG < 1:131614/91‑1 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAAAAGAAAAAAAAAAACAAACCCG < 2:2320585/91‑1 ATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGACGACCGTAGTATTGAACTTTCTAATATAGAAGACCAAGAAAAACAAACCCG < 2:2320936/91‑1 AACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG‑CCAACACAGTGCTTGCGATGATGCATACA < 1:2784255/91‑1 ACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACA < 1:2257798/91‑1 CCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTT < 2:2173049/91‑1 GTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGG < 1:39971/91‑1 GTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGG < 1:40464/91‑1 TCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGC < 2:331419/91‑1 GTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTT < 1:2289104/91‑1 TAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTG < 1:2242949/91‑1 TAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTG < 2:1826679/91‑1 AACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACG > 2:992141/1‑91 ACCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGG < 1:2826297/91‑1 CCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGT < 2:966475/91‑1 CCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGT > 2:3381513/1‑91 CCCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGT > 1:1333315/1‑91 CCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTC < 2:1447362/91‑1 CCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTC < 2:429192/91‑1 CCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTC > 2:3633679/1‑91 CCGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTC > 2:3633730/1‑91 CGTCAAACACCGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCG > 2:2237652/1‑91 CGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCG > 1:1302292/1‑91 CGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCG > 2:766162/1‑91 CGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCG > 1:1302301/1‑91 CGTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCG > 2:1177468/1‑91 GTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTCGAAAGTTCACTACTACGGTCGA > 2:3618177/1‑91 GTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCGA > 1:2401546/1‑91 GTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCGA > 2:816521/1‑91 GTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCGA > 1:2419835/1‑91 ATATGATTTAGTATCTATTTTCGAAGATTGTCTAAACGCTGCCGTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1619513‑1619608‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgTCAAACACAGTGCTTGCGATGATGCATACATGTGTTGGCGGGTTTGTTTTTATTGGTCTTCTATATTAGAAAGTTCAATACTACGGTCGA < USA300TCH1516_ALE/1619646‑1619557 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |