BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1619608	153 (0.750)	9 (0.050)	6/148	NT	5.3%	intergenic (+11/+94)	proC/rnz	Pyrroline‑5‑carboxylate reductase/Ribonuclease Z
*	?	USA300TCH1516_ALE	= 1619646	181 (0.960)	9 (0.050)	6/148	NT	5.3%	intergenic (+49/+56)	proC/rnz	Pyrroline‑5‑carboxylate reductase/Ribonuclease Z

Only 100 of 228 total aligned reads displayed.

GTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAAT  >  USA300TCH1516_ALE/1619556‑1619736

gTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGa                                                                                            >  1:2288001/1‑91 (MQ=255)

 tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAc                                                                                           >  2:816521‑M2/1‑90 (MQ=255)

 tCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAc                                                                                           >  1:2401546‑M2/1‑90 (MQ=255)

  cGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcg                                                                                          >  1:1302292‑M2/1‑89 (MQ=255)

  cGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcg                                                                                          >  2:1177468‑M2/1‑89 (MQ=255)

  cGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACGGTGTTTGAcg                                                                                          >  2:2237652‑M2/1‑89 (MQ=255)

   gACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcgg                                                                                         <  2:429192‑M2/91‑4 (MQ=255)

   gACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcgg                                                                                         >  2:3633730‑M2/1‑88 (MQ=255)

    aCCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcggg                                                                                        >  1:1333315‑M2/1‑87 (MQ=255)

     ccGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcgggt                                                                                       <  1:2826297‑M2/91‑6 (MQ=255)

        tagtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAt                                                                                    >  2:305867/1‑91 (MQ=255)

         agtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAtt                                                                                   >  2:2316710/1‑91 (MQ=255)

          gtaTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAttt                                                                                  >  1:2489602/1‑91 (MQ=255)

            aTTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTAttttt                                                                                >  1:1248362/1‑91 (MQ=255)

             ttGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTta                                                                               >  2:3550295/1‑91 (MQ=255)

             ttGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTta                                                                               >  1:3607136/1‑91 (MQ=255)

              tGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTtat                                                                              >  2:3360469/1‑91 (MQ=255)

               gAACTTTCTAATATAGAAGACCAATAACAACAAACCCGCCAACACATGTATGCAACATCGCAAGCACTGTGTTTGACGGGTTATGTTtata                                                                             >  2:1669148/1‑91 (MQ=255)

               gAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTtata                                                                             >  2:106318/1‑91 (MQ=255)

                 aCTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAAt                                                                           <  2:3132790/91‑1 (MQ=255)

                  cTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAAtt                                                                          >  1:1704248/1‑91 (MQ=255)

                   tttCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAAttt                                                                         <  2:1544851/91‑1 (MQ=255)

                    ttCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTa                                                                        <  1:374330/91‑1 (MQ=255)

                      cTAATATAGAAGGCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAtt                                                                      <  2:3617874/91‑1 (MQ=255)

                      cTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTAtt                                                                      <  2:3617751/91‑1 (MQ=255)

                          tataGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTa                                                                  <  2:720600/91‑1 (MQ=255)

                           ataGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAt                                                                 >  2:1267886/1‑91 (MQ=255)

                            taGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATCTTTATACTTTATTGTTAtt                                                                >  2:3696732/1‑91 (MQ=255)

                              gaagaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTg                                                              <  1:632471/91‑1 (MQ=255)

                                 gaCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCa                                                           <  2:1584387/91‑1 (MQ=255)

                                  aCCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCaa                                                          >  1:2027367/1‑91 (MQ=255)

                                    cAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGc                                                        <  2:3877722/91‑1 (MQ=255)

                                      aTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                      >  1:1481845/1‑91 (MQ=255)

                                      aTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                      <  1:738777/91‑1 (MQ=255)

                                      aTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                      >  1:3721372/1‑91 (MQ=255)

                                      aTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                      >  2:749016/1‑91 (MQ=255)

                                      aTAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCAt                                                      <  2:2982337/91‑1 (MQ=255)

                                        aaaaaCAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTg                                                    >  1:3074692/1‑91 (MQ=255)

                                              aaacCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttatt                                              <  2:307932/91‑1 (MQ=255)

                                               aacCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTttatta                                             <  1:512218/91‑1 (MQ=255)

                                               aacCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTCCACGGGTTATCCTTATAATTTATTGTTATTTGGCAAGCATTGTttatta                                             >  2:1829584/1‑91 (MQ=255)

                                                 cccGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACt                                           >  1:2879359/1‑91 (MQ=255)

                                                  ccGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACtt                                          >  2:2504843/1‑91 (MQ=255)

                                                   cGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                         >  2:3280874/1‑91 (MQ=255)

                                                   cGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACttt                                         <  2:871327/91‑1 (MQ=255)

                                                     ccAACACATGTATGCATCATCGCAAGCACTGTGTTTGAcgggtttgtttttattggtcttctatattagaaagttcaatactacggtcgac                                       <  1:40464‑M2/91‑54 (MQ=255)

                                                       aaCACATGTATGCATCATCGCAAGCACTGTGTTTGAcgggtttgtttttattggtcttctatattagaaagttcaatactacggtcgacgg                                     <  2:2173049‑M2/91‑56 (MQ=255)

                                                       aaCACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTct                                     >  2:576264/1‑90 (MQ=255)

                                                       aaCACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCa                                     <  1:83531/91‑1 (MQ=255)

                                                       aaCACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCa                                     <  1:1737596/91‑1 (MQ=255)

                                                        acacATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAt                                    >  1:337435/1‑91 (MQ=255)

                                                         cacaTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAtt                                   <  2:3755317/91‑1 (MQ=255)

                                                         cacaTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAtt                                   <  1:1719384/91‑1 (MQ=255)

                                                         cacaTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCAtt                                   <  1:2985761/91‑1 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 <  1:273903/91‑1 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 >  2:3458993/1‑91 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 <  1:783895/91‑1 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 <  1:356586/91‑1 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 <  1:357831/91‑1 (MQ=255)

                                                           caTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAg                                 >  1:3820253/1‑91 (MQ=255)

                                                            aTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGa                                <  2:2831311/91‑1 (MQ=255)

                                                            aTGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGa                                <  1:2410272/91‑1 (MQ=255)

                                                             tGTATGCATCATCGCAAGCACTGTGTTTGAcgggtttgtttttattggtcttctatattagaaagttcaatactacggtcgacggcagcgt                               <  1:2257798‑M2/91‑62 (MQ=255)

                                                             tGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAt                               <  2:2128634/91‑1 (MQ=255)

                                                             tGTATGCATCATCGCAAGCACTGTGTTGGgggtttgtttttattggtcttctatattagaaagttcaatactacggtcgacggcagcgtt                                <  1:2784255‑M2/91‑62 (MQ=255)

                                                              gTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAtt                              >  1:1740320/1‑91 (MQ=255)

                                                               tATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAttt                             >  1:93981/1‑91 (MQ=255)

                                                               tATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGAttt                             <  2:2077900/91‑1 (MQ=255)

                                                                 tGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTa                           >  1:1040885/1‑91 (MQ=255)

                                                                 tGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTa                           <  2:1945604/91‑1 (MQ=255)

                                                                 tGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTa                           <  1:1382693/91‑1 (MQ=255)

                                                                  gCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTaa                          <  1:1314663/91‑1 (MQ=255)

                                                                   catcatCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTaaa                         >  1:1180607/1‑91 (MQ=255)

                                                                     tcatcGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAAc                       >  1:1528528/1‑91 (MQ=255)

                                                                       atcGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTa                     <  1:2620540/91‑1 (MQ=255)

                                                                       atcGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTa                     >  1:3306265/1‑91 (MQ=255)

                                                                        tcGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTAt                    <  2:1772116/91‑1 (MQ=255)

                                                                         cGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                   <  1:3627313/91‑1 (MQ=255)

                                                                         cGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                   <  2:3702223/91‑1 (MQ=255)

                                                                         cGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                   <  1:1629079/91‑1 (MQ=255)

                                                                         cGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                   <  2:1098242/91‑1 (MQ=255)

                                                                         cGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATc                   <  2:937977/91‑1 (MQ=255)

                                                                          gCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTGTTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCa                  >  2:677160/1‑91 (MQ=255)

                                                                           cAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa                 <  1:2237098/91‑1 (MQ=255)

                                                                           cAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaa                 >  2:2665971/1‑91 (MQ=255)

                                                                            aaGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaa                >  1:3526639/1‑91 (MQ=255)

                                                                             aGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaaa               >  1:1789255/1‑91 (MQ=255)

                                                                             aGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCaaaa               >  1:398468/1‑91 (MQ=255)

                                                                              gCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAAt              >  1:3035082/1‑91 (MQ=255)

                                                                               cACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTAGTTGGCAAGCAATGTATATTACTTTGTCATTAGATTTTAAAACTATCAAAATc             <  2:1144111/91‑1 (MQ=255)

                                                                                aCTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCt            <  1:214574/91‑1 (MQ=255)

                                                                                  tgtgTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCttt          >  2:850421/1‑91 (MQ=255)

                                                                                    tgtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTa        >  2:149104/1‑91 (MQ=255)

                                                                                     gtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTAc       <  1:1139009/91‑1 (MQ=255)

                                                                                     gtTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTAc       <  2:1463267/91‑1 (MQ=255)

                                                                                        tGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaaa    >  2:2220709/1‑91 (MQ=255)

                                                                                          aCGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaaaat  <  2:3340592/91‑1 (MQ=255)

                                                                                          aCGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaaaat  <  2:2781374/91‑1 (MQ=255)

                                                                                          aCGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaaaat  <  1:840808/91‑1 (MQ=255)

                                                                                          aCGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACaaaat  <  1:1779285/91‑1 (MQ=255)

GTCGACCGTAGTATTGAACTTTCTAATATAGAAGACCAATAAAAACAAACCCGCCAACACATGTATGCATCATCGCAAGCACTGTGTTTGACGGGTTATTTTTATAATTTATTGTTATTTGGCAAGCATTGTTTATTACTTTGTCATTAGATTTTAAAACTATCAAAATCTTTTACAAAAT  >  USA300TCH1516_ALE/1619556‑1619736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.