| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1647574 = | 234 (1.150) | 28 (0.150) | 8/148 | NT | 12.9% | intergenic (+4/+60) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM |
| ? | USA300TCH1516_ALE | 1647624 = | 161 (0.860) | intergenic (+54/+10) | USA300HOU_RS08180/lipM | hypothetical protein/Octanoyltransferase LipM | |||||
AAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1647669‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATT > USA300TCH1516_ALE/1647624‑1647713 AAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑T > 1:3204231/1‑91AAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑T < 1:1190468/91‑1 AATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TT > 2:3298822/1‑91 ATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATACAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTT > 2:167817/1‑91 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGGATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT > 2:3664002/1‑91 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT > 2:3370363/1‑91 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT > 2:3369789/1‑91 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT > 2:3369363/1‑91 TATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTT < 1:2914112/91‑1 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 2:1636231/1‑91 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 1:2404157/1‑91 TCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT > 2:1636246/1‑91 TAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACG > 2:3017419/1‑91 AAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGA > 1:764767/1‑91 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGAT > 2:2677902/1‑91 AAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCGTTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGAT > 2:2677956/1‑91 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTT > 2:1075403/1‑91 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTT > 1:4681/1‑91 ATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTT > 2:446014/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 2:1221216/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 2:1221333/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 2:882369/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 1:1948158/1‑91 TGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTT > 1:3045603/1‑91 GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTT > 2:2306516/1‑91 GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTct > 2:624878/1‑89 GGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTT > 1:3837030/1‑91 AGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAG > 1:3916315/1‑91 AGCAAGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTCCAG > 1:3122121/1‑91 GCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGT > 1:2419568/1‑91 GCACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGT > 1:221122/1‑91 GCACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGT > 2:2293594/1‑91 CACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTATTAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTT > 2:723679/1‑91 CACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTT > 1:2141037/1‑91 CACGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTT > 1:3739661/1‑91 CGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAA > 1:866846/1‑91 CGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAA > 1:2786130/1‑91 CGTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAA > 2:3710956/1‑91 GTAGACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAT > 1:3518094/1‑91 GACTATTTTACCTACAAGTGCTTCCA‑TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCT > 2:1893646/1‑91 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGT > 1:1000336/1‑91 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGT > 1:1000268/1‑91 TTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGT > 1:2845248/1‑91 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTT > 1:3314829/1‑91 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTT > 1:3315729/1‑91 TTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTT > 1:3316311/1‑91 gaaTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTA > 2:599779/4‑91 TTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTA > 1:1758709/1‑91 TTTATTCTAAAAACTACTTTCTAAACATCCATTTATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAA > 1:2228307/1‑91 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT > 1:182228/1‑91 TTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAT > 2:399131/1‑91 TATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATT > 1:1431721/1‑91 TATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATT < 2:413306/91‑1 TATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATT < 1:3823003/91‑1 AAATATCGTTCAGATGAATGGATGTTTAGAAAGTAGTTTTTAGAATAAAAAATGGAAGCACGTAGACTATTTTACCTACAAGTGCTTCCG‑TTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1647669‑1647574‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATT > USA300TCH1516_ALE/1647624‑1647713 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |