New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1647574 =234 (1.150)28 (0.150) 8/148 NT 12.9% intergenic (+4/+60) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM
?USA300TCH1516_ALE 1647624 = 161 (0.860)intergenic (+54/+10) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM

Only 100 of 302 total aligned reads displayed.

ATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGA  >  USA300TCH1516_ALE/1647484‑1647664
                                                                                          |                                                                                           
atatattatTTCTTCATCTTAACTGAAAACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATaa                                                                                             <  2:671713/88‑1 (MQ=255)
aattaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaata                                                                                             <  2:413306‑M1/1‑1 (MQ=255)
aattaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaata                                                                                             >  1:1431721‑M1/91‑91 (MQ=255)
  ttaacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagataaatggatgtttagaaagtagtttttagaataaa                                                                                           >  1:2228307‑M1/89‑91 (MQ=255)
    attattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATaaaaaa                                                                                         >  1:2598402/1‑91 (MQ=255)
    attattTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATaaaaaa                                                                                         <  1:460016/91‑1 (MQ=255)
    aacagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaa                                                                                         >  1:3315729‑M1/87‑91 (MQ=255)
     acagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaaa                                                                                        >  1:1000268‑M1/86‑91 (MQ=255)
     acagaagctcaattggcagaagtggaagaattaactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaataaaaaa                                                                                        >  1:2845248‑M1/86‑91 (MQ=255)
         ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGa                                                                                   >  1:3280238/1‑91 (MQ=255)
         ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGa                                                                                   <  1:3492251/91‑1 (MQ=255)
         ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGa                                                                                   >  2:2489483/1‑91 (MQ=255)
         ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGa                                                                                   <  1:2589156/91‑1 (MQ=255)
         ttcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGa                                                                                   >  2:1414327/1‑91 (MQ=255)
          tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGaa                                                                                  <  2:3056929/91‑1 (MQ=255)
          tcttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGaa                                                                                  >  2:1722243/1‑91 (MQ=255)
           cttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAg                                                                                 <  2:2450779/91‑1 (MQ=255)
            ttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGc                                                                                <  1:844030/91‑1 (MQ=255)
            ttcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGc                                                                                <  1:1852792/91‑1 (MQ=255)
             tcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCa                                                                               >  1:953730/1‑91 (MQ=255)
             tcATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCa                                                                               <  2:817415/91‑1 (MQ=255)
             tcAACTTAAAGGAAGACAAACGCAAATAAAGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCa                                                                               <  2:2937578/91‑1 (MQ=255)
              cATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCAc                                                                              <  1:1243553/91‑1 (MQ=255)
               aTCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACt                                                                             >  1:2725153/1‑91 (MQ=255)
                 catAACTAATGACCAACACCAAAATCGCAAAGCAAGGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGTAGCACTTg                                                                           <  2:312853/89‑1 (MQ=255)
                   tAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAGGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTa                                                                         <  2:1793722/91‑1 (MQ=255)
                    aaCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGCATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAg                                                                        >  2:3247890/1‑91 (MQ=255)
                     aCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAgg                                                                       >  2:3455346/1‑91 (MQ=255)
                     aCTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAgg                                                                       >  1:3771466/1‑91 (MQ=255)
                      cTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGt                                                                      <  2:1755377/91‑1 (MQ=255)
                      cTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGt                                                                      <  1:3200395/91‑1 (MQ=255)
                           gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 <  1:1061863/91‑1 (MQ=255)
                           gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 >  2:3942749/1‑91 (MQ=255)
                           gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 <  2:3345161/91‑1 (MQ=255)
                           gACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAAt                                                                 >  2:386038/1‑91 (MQ=255)
                             ccAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAg                                                               >  1:1644197/1‑91 (MQ=255)
                              cAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGt                                                              >  2:1858684/1‑91 (MQ=255)
                                aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  2:2892035/1‑91 (MQ=255)
                                aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  1:2803179/1‑91 (MQ=255)
                                aCGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCt                                                            >  2:459141/1‑91 (MQ=255)
                                 cGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTa                                                           >  2:1316988/1‑91 (MQ=255)
                                    aaaTATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGt                                                        <  1:920635/91‑1 (MQ=255)
                                    aaaTATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGt                                                        <  1:3546390/91‑1 (MQ=255)
                                    aaaTATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGt                                                        >  1:2987636/1‑91 (MQ=255)
                                     aactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCTACGTg                                                       >  1:2141037‑M1/54‑91 (MQ=255)
                                     aactgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCTACGTg                                                       >  1:3739661‑M1/54‑91 (MQ=255)
                                      atatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGc                                                      >  1:499224/1‑91 (MQ=255)
                                       tatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt                                                     >  2:15776/1‑91 (MQ=255)
                                       tatCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt                                                     <  1:30898/91‑1 (MQ=255)
                                       ctgaaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCt                                                     >  1:3916315‑M1/52‑91 (MQ=255)
                                        atCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCtt                                                    <  1:2008718/91‑1 (MQ=255)
                                         tCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTc                                                   >  2:2021107/1‑91 (MQ=255)
                                          agaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTcc                                                  >  2:624878‑M1/49‑91 (MQ=255)
                                          aaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTcc                                                  >  1:3837030‑M1/49‑91 (MQ=255)
                                          aaaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTcc                                                  >  2:2306516‑M1/49‑91 (MQ=255)
                                           aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                 >  2:882369‑M1/48‑91 (MQ=255)
                                           aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                 >  2:1221216‑M1/48‑91 (MQ=255)
                                           aaaatatcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCa                                                 >  1:3045603‑M1/48‑91 (MQ=255)
                                             aaaGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtt                                               >  2:238321/1‑91 (MQ=255)
                                               aGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt                                             <  2:1927372/91‑1 (MQ=255)
                                                gCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAttttt                                            <  1:2826637/91‑1 (MQ=255)
                                                atcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttt                                             >  2:2677902‑M1/43‑91 (MQ=255)
                                                 tcgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAA‑TGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCAtttttt                                           >  1:764767‑M1/42‑91 (MQ=255)
                                                  aaTGCGTAAGTATAAAAGAAATCATAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                          <  2:3687045/91‑1 (MQ=255)
                                                  aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                          <  1:1274965/91‑1 (MQ=255)
                                                   aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                         <  2:2725153/91‑1 (MQ=255)
                                                   aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTGCCATTTTTTAt                                         >  1:3574970/1‑91 (MQ=255)
                                                    tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                        >  1:3417984/1‑91 (MQ=255)
                                                    tGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAACCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAtt                                        >  2:3475104/1‑91 (MQ=255)
                                                         aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa                                   <  2:1820062/91‑1 (MQ=255)
                                                          aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                  >  1:3712882/1‑91 (MQ=255)
                                                              taAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTCTTTATTCTAAAAacta                              >  2:3780554/1‑91 (MQ=255)
                                                                aaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                            >  1:205258/1‑91 (MQ=255)
                                                                aaaGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                            <  1:1514004/91‑1 (MQ=255)
                                                                   gAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTc                         <  1:3617306/91‑1 (MQ=255)
                                                                    aaaTCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCt                        >  2:2224303/1‑91 (MQ=255)
                                                                       tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                     <  1:1930159/91‑1 (MQ=255)
                                                                       tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                     <  2:2260472/91‑1 (MQ=255)
                                                                       tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                     <  1:706080/91‑1 (MQ=255)
                                                                       tCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                     <  1:2644617/91‑1 (MQ=255)
                                                                         aaaGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                   >  2:2093002/1‑91 (MQ=255)
                                                                         aaaGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                   <  2:3315820/91‑1 (MQ=255)
                                                                         aaaGAAGAAAATACATAAAAAAA‑CGGAAGCACCTGTAGGTAAAATAGTCCACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                   >  2:3078748/1‑91 (MQ=255)
                                                                          aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTATTAACTACTTTCTAAACAt                  >  2:1361675/1‑91 (MQ=255)
                                                                          aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTTTAAACAt                  >  2:3516139/1‑91 (MQ=255)
                                                                          aagaagAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTATTATAATAAAAACTACTTTCTAAACAt                  <  2:137675/91‑1 (MQ=255)
                                                                            gaagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                >  2:2784771/1‑91 (MQ=255)
                                                                            gaagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                >  2:737598/1‑91 (MQ=255)
                                                                             aagaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCa               <  2:517740/91‑1 (MQ=255)
                                                                               gaaAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt             <  1:1152092/91‑1 (MQ=255)
                                                                                  aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt          >  1:1794175/1‑91 (MQ=255)
                                                                                  aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt          <  1:1563864/91‑1 (MQ=255)
                                                                                  aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt          >  2:1968145/1‑91 (MQ=255)
                                                                                  aaTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt          <  2:954469/91‑1 (MQ=255)
                                                                                   aTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc         >  1:2476695/1‑91 (MQ=255)
                                                                                   aTAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc         >  1:635941/1‑91 (MQ=255)
                                                                                      gATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGa      >  2:2558953/1‑91 (MQ=255)
                                                                                       aTAAAAAAA‑CGGAAGCACTTGTAGGTAAAATACTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAGATCCATTCATCTGaa     <  1:3372123/91‑1 (MQ=255)
                                                                                         aaaaaaa‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg   >  2:3413139/1‑91 (MQ=255)
                                                                                          AAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa  >  1:2404157‑M1/1‑91 (MQ=255)
                                                                                          |                                                                                           
ATTTATTATTTCTTCATCTTAACTGAAGACCAACGCAAATATCGCAAAGCAATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAA‑CGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGA  >  USA300TCH1516_ALE/1647484‑1647664

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.