New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 1647574 =234 (1.150)28 (0.150) 8/148 NT 12.9% intergenic (+4/+60) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM
?USA300TCH1516_ALE 1647624 = 161 (0.860)intergenic (+54/+10) USA300HOU_RS08180/lipM hypothetical protein/Octanoyltransferase LipM

Only 100 of 251 total aligned reads displayed.

AATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647534‑1647714
                                                                                          |                                                                                          
cgttcagatgaatggatgtttagaaagtagtttttagaatAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                                                                            >  2:3017419‑M1/41‑91 (MQ=255)
aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                                                                            <  1:1274965/91‑1 (MQ=255)
aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                                                                            >  2:670868/1‑91 (MQ=255)
aaTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTa                                                                                            <  2:444068/91‑1 (MQ=255)
 aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTAt                                                                                           <  2:2725153/91‑1 (MQ=255)
 aTGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTGCCATTTTTTAt                                                                                           >  1:3574970/1‑91 (MQ=255)
   gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         >  2:82724/1‑91 (MQ=255)
   gCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTc                                                                                         >  1:694542/1‑91 (MQ=255)
    cGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCt                                                                                        >  2:249475/1‑91 (MQ=255)
     gTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTa                                                                                       >  2:1897926/1‑91 (MQ=255)
       aaGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaa                                                                                     <  1:3829500/91‑1 (MQ=255)
        aGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaa                                                                                    >  1:3712882/1‑91 (MQ=255)
         gTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTaaaaa                                                                                   <  1:59962/91‑1 (MQ=255)
             aaaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                               >  1:2932240/1‑91 (MQ=255)
             aaaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactac                                                                               <  2:1732333/91‑1 (MQ=255)
              aaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                                                                              >  2:332923/1‑91 (MQ=255)
              aaaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAactact                                                                              >  1:3580085/1‑91 (MQ=255)
               aaGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACtt                                                                             <  1:3739102/91‑1 (MQ=255)
                     tCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       <  1:2644617/91‑1 (MQ=255)
                     tCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTaaa                                                                       <  2:2260472/91‑1 (MQ=255)
                      cAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAAc                                                                      <  1:1618344/91‑1 (MQ=255)
                       aaaGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACa                                                                     <  2:3315820/91‑1 (MQ=255)
                       aaaGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTACATTTTTTATTCTAAAAACTACTTTCTAAACa                                                                     >  2:1243190/1‑91 (MQ=255)
                        aagaagAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTTTAAACAt                                                                    >  2:3516139/1‑91 (MQ=255)
                        aagaagAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACAt                                                                    <  2:137199/91‑1 (MQ=255)
                        aagaagAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTATTATAATAAAAACTACTTTCTAAACAt                                                                    <  2:137675/91‑1 (MQ=255)
                         agaagaAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATc                                                                   <  2:1820599/91‑1 (MQ=255)
                          gaagaaAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATcc                                                                  >  2:737598/1‑91 (MQ=255)
                           aagaaAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTGTCTAAACATCCa                                                                 >  2:3282960/1‑91 (MQ=255)
                            agaaAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTACATTTTTTATTATAAAAACTACTTTCTAAACATCCAt                                                                >  2:179384/1‑91 (MQ=255)
                             gaaAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCAtt                                                               <  1:1152092/91‑1 (MQ=255)
                              aaaaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTc                                                              >  1:1477709/1‑91 (MQ=255)
                                aaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                            >  1:1794264/1‑91 (MQ=255)
                                aaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                            <  2:954469/91‑1 (MQ=255)
                                aaTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCAt                                                            <  1:1563864/91‑1 (MQ=255)
                                 aTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc                                                           >  1:456816/1‑91 (MQ=255)
                                 aTAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATc                                                           >  1:2476695/1‑91 (MQ=255)
                                   aGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                         >  2:2099131/1‑91 (MQ=255)
                                   aGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTg                                                         >  1:1054960/1‑91 (MQ=255)
                                      tAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAAc                                                      <  2:2420012/91‑1 (MQ=255)
                                       aaaaaaaCGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg                                                     <  2:3093817/91‑1 (MQ=255)
                                       aaaaaaaCGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACg                                                     >  2:3413139/1‑91 (MQ=255)
                                        aaaaaatggaagcacgtagactattttacctacaagtgcttccattttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:764767‑M2/51‑91 (MQ=255)
                                        AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  1:2404157‑M1/1‑91 (MQ=255)
                                        AAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGa                                                    >  2:1636231‑M1/1‑91 (MQ=255)
                                         aaaatggaagcacgtagactattttacctacaagtgcttccgtttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGat                                                   >  2:2677902‑M2/50‑91 (MQ=255)
                                          AAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  >  2:3370363‑M1/1‑91 (MQ=255)
                                          AAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  <  1:2914112‑M1/91‑1 (MQ=255)
                                          AAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATCCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGata                                                  >  2:3664002‑M1/1‑91 (MQ=255)
                                             atggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                               >  2:446014‑M2/46‑91 (MQ=255)
                                             ACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAttt                                               >  1:3204231‑M1/1‑91 (MQ=255)
                                              tggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:1948158‑M2/45‑91 (MQ=255)
                                              tggaagcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATAtttt                                              >  1:3045603‑M2/45‑91 (MQ=255)
                                                gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                            <  1:1692419/91‑1 (MQ=255)
                                                gAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTc                                            >  2:2313149/1‑91 (MQ=255)
                                                 aaGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCa                                           >  1:2101207/1‑91 (MQ=255)
                                                 aaGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCa                                           >  2:47729/1‑91 (MQ=255)
                                                  agcacgtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAg                                          >  1:3916315‑M2/41‑91 (MQ=255)
                                                  agcaagtagactattttacctacaagtgcttccgttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTCCAg                                          >  1:3122121‑M2/41‑91 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  2:1322388/91‑1 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         >  2:1113263/1‑91 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         <  1:121413/91‑1 (MQ=255)
                                                   gCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGt                                         >  1:964906/1‑91 (MQ=255)
                                                    cacgtagactattttacctacaagtgcttccattttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGtt                                        >  1:2141037‑M2/39‑91 (MQ=255)
                                                    cACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGtt                                        <  1:3428564/91‑1 (MQ=255)
                                                      cgtagactattttacctacaagtgcttccattttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      >  2:3710956‑M2/37‑91 (MQ=255)
                                                      cTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTaa                                      <  2:3077391/91‑1 (MQ=255)
                                                        tGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAtt                                    <  1:651795/91‑1 (MQ=255)
                                                         gTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttc                                   >  2:229673/1‑91 (MQ=255)
                                                           aGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttctt                                 >  1:2252703/1‑91 (MQ=255)
                                                            ggTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAAttcttc                                <  1:2767333/91‑1 (MQ=255)
                                                             gTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTcc                               <  1:2299313/91‑1 (MQ=255)
                                                              tAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCa                              >  1:1416189/1‑91 (MQ=255)
                                                               aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             <  1:3253781/91‑1 (MQ=255)
                                                               aaaaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCAc                             >  2:2762482/1‑91 (MQ=255)
                                                                 aaTAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACtt                           >  2:1167751/1‑91 (MQ=255)
                                                                   tAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCt                         <  1:2496530/91‑1 (MQ=255)
                                                                     gTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGc                       >  2:3495052/1‑91 (MQ=255)
                                                                     gTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGc                       <  2:1560854/91‑1 (MQ=255)
                                                                     gTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGc                       <  1:1769044/91‑1 (MQ=255)
                                                                         aCGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAt                   >  1:2715907/1‑91 (MQ=255)
                                                                          cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt                  >  1:3391393/1‑91 (MQ=255)
                                                                          cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt                  <  2:2262366/91‑1 (MQ=255)
                                                                          cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt                  >  1:2036344/1‑91 (MQ=255)
                                                                          cGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAAtt                  <  1:265671/91‑1 (MQ=255)
                                                                             gCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAg               >  2:3770540/1‑91 (MQ=255)
                                                                              cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCACTTGAGc              >  2:2579271/1‑91 (MQ=255)
                                                                              cTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGc              <  2:3264710/91‑1 (MQ=255)
                                                                                 ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           >  2:2971127/1‑91 (MQ=255)
                                                                                 ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           <  1:221969/91‑1 (MQ=255)
                                                                                 ccATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTc           >  1:1119632/1‑91 (MQ=255)
                                                                                   aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGCTATTTTTCCGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg         >  2:3538099/1‑91 (MQ=255)
                                                                                   aTTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTg         <  1:1520839/91‑1 (MQ=255)
                                                                                    ttttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGt        >  1:1000268‑M2/7‑91 (MQ=255)
                                                                                     tttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGtt       >  1:3314829‑M2/6‑91 (MQ=255)
                                                                                     tttttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGtt       >  1:3316311‑M2/6‑91 (MQ=255)
                                                                                      gaatATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTa      >  2:599779‑M2/5‑91 (MQ=255)
                                                                                        ttATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAt    >  2:399131‑M2/3‑91 (MQ=255)
                                                                                         tATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAAtt   <  1:3823003‑M2/90‑1 (MQ=255)
                                                                                          aTTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTc  <  2:2079149/91‑1 (MQ=255)
                                                                                          |                                                                                          
AATGCGTAAGTATAAAAGAAATCAAAGAAGAAAATAGATAAAAAAACGGAAGCACTTGTAGGTAAAATAGTCTACGTGCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTC  >  USA300TCH1516_ALE/1647534‑1647714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.