| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1689934 | 183 (0.900) | 11 (0.060) | 9/150 | NT | 5.5% | intergenic (‑69/+67) | dnaJ/dnaK | Chaperone protein DnaJ/Chaperone protein DnaK |
| ? | USA300TCH1516_ALE | = 1689961 | 205 (1.070) | intergenic (‑96/+40) | dnaJ/dnaK | Chaperone protein DnaJ/Chaperone protein DnaK | |||||
ACTTCATAATAATCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1689840‑1689934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGAGAG < USA300TCH1516_ALE/1689961‑1689872 ACTTCATAATAATCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAA > 2:2481374/1‑91ACTTCATAATAATCTCTTTTGGCCACAGCTATCTCACCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAACTAA > 2:3106541/1‑91 CTTCATAATAATCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAA > 2:810024/1‑91 TTCATAATAATCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAA < 1:2202754/91‑1 TCATAATAATCTCTTTTGGCCACAGCTATCACTCCTTTTCTTAATTAACCCATATAGTTTAACGTAATATGTCATACTATCCAAATAACAA > 2:3147630/1‑91 CATAATAGTCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAG < 1:3764955/91‑1 CACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGTCAATAGAACATT < 2:956189/91‑1 GCTATCTCTGCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGCCAAAGTCAATAGAACATTGGCT < 1:3782070/91‑1 CTATCTCTCCTTTTCTTAATTAACTCATATGGTTGAACGTAAGATGTCATACTAGCCAAATAAAAAGCCAAAGTCAATAGAACATTGGCTT < 2:579041/91‑1 CTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGC < 2:765284/91‑1 CTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGC < 2:765243/91‑1 TCTCCTTTTCTTAATTAACTCATATAGTTTAACGCAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCT < 1:2039668/91‑1 CTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCTT < 2:1863762/91‑1 TCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTT < 1:3463509/91‑1 TCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTT < 1:3463415/91‑1 CCTTTTCTTAATTAACTCATATAGTGTAACGTAATATGACATACTATGCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTTT < 2:380932/91‑1 TTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATT < 1:1047768/91‑1 AAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGA > 2:3741799/1‑91 AAAGTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGA > 1:1148694/1‑91 AAGTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGAG > 1:584447/1‑91 AGTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGAGA > 1:24671/1‑91 GTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGAGAG < 1:897218/91‑1 ACTTCATAATAATCTCTTTTGGCCACAGCTATCTCTCCTTTTCTTAATTAACTCATATAGTTTAACGTAATATGTCATACTATCCAAATAAAAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/1689840‑1689934‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagTCAAAGTCAATAGAACATTGGCTTTGGCTTTTTATTTGGATAGTATGACATATTACGTTAAACTATATGAGTTAATTAAGAAAAGGAGAG < USA300TCH1516_ALE/1689961‑1689872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |